Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G25500 - ( choline transporter-related )
19 Proteins interacs with AT1G25500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternSynthetic LethalityCo-purification | FSW = 0.1379
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G20000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2420
| Unknown | TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL |
AT4G29260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3054
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0074
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0153
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0284
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | ARAC10 GTP BINDING |
AT2G44860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.0955
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT2G41380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0814
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT2G20510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1662
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT1G10090 | PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | UNKNOWN PROTEIN |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.0762
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0474
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G78770 | PredictedSynthetic Lethality | FSW = 0.0301
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT4G39830 | Predictedtwo hybrid | FSW = 0.0202
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT5G01670 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MS | FSW = 0.1633
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT5G16170 | Predictedsynthetic growth defect | FSW = 0.0791
| Unknown | UNKNOWN PROTEIN |
AT5G45620 | PredictedSynthetic Lethality | FSW = 0.0379
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454