Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G44860 - ( 60S ribosomal protein L24 putative )
68 Proteins interacs with AT2G44860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternSynthetic LethalityCo-purificationco-fractionationCo-fractionation | FSW = 0.0617
| Class C:nucleus | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G14420 | PredictedAffinity Capture-MS | FSW = 0.0063
| Class C:nucleus | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT1G02780 | PredictedAffinity Capture-Western | FSW = 0.0218
| Class C:nucleus | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2551
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G25630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0829
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.4050
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1289
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2531
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
AT4G13980 | Predictedbiochemical | FSW = 0.0019
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G65030 | PredictedAffinity Capture-MS | FSW = 0.1750
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2826
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G23620 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3463
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
AT2G28740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1123
| Class C:nucleus | HIS4 DNA BINDING |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2554
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT3G16810 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3021
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT3G07050 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3558
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
AT4G25340 | PredictedAffinity Capture-MS | FSW = 0.0087
| Class C:nucleus | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT3G18600 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1746
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G15550 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2846
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G01100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0923
| Unknown | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING |
AT3G20000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1298
| Unknown | TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0396
| Unknown | HISTONE H4 |
AT4G29260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1221
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G22890 | Predictedsynthetic growth defect | FSW = 0.0041
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT2G36620 | PredictedPhylogenetic profile method | FSW = 0.0217
| Unknown | RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G14320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0569
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT1G06380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2541
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G45780 | Predictedtwo hybrid | FSW = 0.0337
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0796
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G56760 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT2G40360 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3285
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G47630 | PredictedSynthetic Lethality | FSW = 0.0127
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G20510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.1043
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT1G10060 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G50920 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.2985
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0027
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G13160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2037
| Unknown | SDA1 FAMILY PROTEIN |
AT1G23280 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0981
| Unknown | MAK16 PROTEIN-RELATED |
AT1G25260 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2703
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G25500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.0955
| Unknown | CHOLINE TRANSPORTER-RELATED |
AT1G52980 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1825
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G63660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0037
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G18220 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3170
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.0923
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT2G36930 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1552
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT5G01670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.0469
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT5G06360 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.3970
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2912
| Unknown | PESCADILLO-RELATED |
AT5G20560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0784
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G38890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0681
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G57480 | PredictedReconstituted Complex | FSW = 0.0417
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G15460 | PredictedAffinity Capture-MS | FSW = 0.1998
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.1498
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT4G34910 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1525
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G05450 | PredictedAffinity Capture-MS | FSW = 0.2708
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.2429
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G52820 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1649
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
AT5G55310 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G56075 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT5G61770 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2711
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.1966
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G66610 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0219
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT1G52930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2365
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G12340 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0250
| Unknown | FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G55300 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G56060 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454