Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44860 - ( 60S ribosomal protein L24 putative )

68 Proteins interacs with AT2G44860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Synthetic Lethality

Co-purification

co-fractionation

Co-fractionation

FSW = 0.0617

Class C:

nucleus

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT3G14420

Predicted

Affinity Capture-MS

FSW = 0.0063

Class C:

nucleus

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT1G02780

Predicted

Affinity Capture-Western

FSW = 0.0218

Class C:

nucleus

EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2551

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0829

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G10300Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.4050

Class C:

nucleus

GTP-BINDING PROTEIN-RELATED
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1289

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT3G58660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2531

Class C:

nucleus

60S RIBOSOMAL PROTEIN-RELATED
AT4G13980

Predicted

biochemical

FSW = 0.0019

Class C:

nucleus

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT1G65030

Predicted

Affinity Capture-MS

FSW = 0.1750

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G55620

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2826

Class C:

nucleus

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G23620

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3463

Class C:

nucleus

BRIX DOMAIN-CONTAINING PROTEIN
AT2G28740Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1123

Class C:

nucleus

HIS4 DNA BINDING
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2554

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT3G16810

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3021

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT3G07050

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3558

Class C:

nucleus

GTP-BINDING FAMILY PROTEIN
AT4G25340

Predicted

Affinity Capture-MS

FSW = 0.0087

Class C:

nucleus

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT3G18600

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1746

Class C:

nucleus

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G15550

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2846

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G01100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0923

Unknown

ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT3G20000

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1298

Unknown

TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL
AT1G07660Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0396

Unknown

HISTONE H4
AT4G29260

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1221

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT3G22890

Predicted

synthetic growth defect

FSW = 0.0041

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT2G36620

Predicted

Phylogenetic profile method

FSW = 0.0217

Unknown

RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G14320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.0569

Unknown

30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT1G06380

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2541

Unknown

RIBOSOMAL PROTEIN-RELATED
AT3G45780

Predicted

two hybrid

FSW = 0.0337

Unknown

PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT4G36640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0796

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT3G56760

Predicted

Affinity Capture-MS

FSW = 0.0070

Unknown

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT2G40360

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3285

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G47630

Predicted

Synthetic Lethality

FSW = 0.0127

Unknown

MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT2G20510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Affinity Capture-MS

FSW = 0.1043

Unknown

ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT1G10060

Predicted

Affinity Capture-MS

FSW = 0.0190

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT1G50920

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

FSW = 0.2985

Unknown

GTP-BINDING PROTEIN-RELATED
AT1G05180

Predicted

Affinity Capture-MS

FSW = 0.0027

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G13160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2037

Unknown

SDA1 FAMILY PROTEIN
AT1G23280

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0981

Unknown

MAK16 PROTEIN-RELATED
AT1G25260

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2703

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G25500

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.0955

Unknown

CHOLINE TRANSPORTER-RELATED
AT1G52980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1825

Unknown

GTP-BINDING FAMILY PROTEIN
AT1G63660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0037

Unknown

GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT2G18220

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3170

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G34890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.0923

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT2G36930

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1552

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT5G01670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-Western

FSW = 0.0469

Unknown

ALDOSE REDUCTASE PUTATIVE
AT5G06360

Predicted

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.3970

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2912

Unknown

PESCADILLO-RELATED
AT5G20560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.0784

Unknown

BETA-13-GLUCANASE PUTATIVE
AT5G26250

Predicted

Affinity Capture-MS

FSW = 0.0405

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G38890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0681

Unknown

EXORIBONUCLEASE-RELATED
AT5G57480

Predicted

Reconstituted Complex

FSW = 0.0417

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT3G15460

Predicted

Affinity Capture-MS

FSW = 0.1998

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.1498

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G34910

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1525

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G05450

Predicted

Affinity Capture-MS

FSW = 0.2708

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.2429

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G52820

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1649

Unknown

WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE
AT5G55310

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G56075

Predicted

Affinity Capture-MS

FSW = 0.0137

Unknown

ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE
AT5G61770

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2711

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.1966

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G66610

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0219

Unknown

DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING
AT1G52930

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2365

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G12340

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0250

Unknown

FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G55300

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.0850

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G56060

Predicted

Affinity Capture-MS

FSW = 0.0142

Unknown

ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454