Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16840 - ( ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding )

99 Proteins interacs with AT3G16840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G25520

Predicted

Affinity Capture-MS

FSW = 0.1223

Unknown

ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1701

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.1571

Unknown

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.0485

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.0597

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.0554

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G47610

Predicted

Affinity Capture-MS

FSW = 0.1709

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G66680

Predicted

Affinity Capture-MS

FSW = 0.0061

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT1G43170

Predicted

Affinity Capture-MS

FSW = 0.0756

Unknown

ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G22780

Predicted

Affinity Capture-MS

FSW = 0.0217

Unknown

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.1175

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G60640

Predicted

Affinity Capture-Western

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0194

Unknown

ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING
AT1G64790Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0038

Unknown

BINDING
AT3G44300

Predicted

Affinity Capture-MS

FSW = 0.0205

Unknown

NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT3G30390

Predicted

Affinity Capture-Western

FSW = 0.0468

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G26030

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT5G22440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2050

Unknown

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT1G30270

Predicted

Affinity Capture-MS

FSW = 0.0065

Unknown

CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT1G07890

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT3G52140Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0137

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT2G45130

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0256

Unknown

SPX3 (SPX DOMAIN GENE 3)
AT3G13580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2096

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G26160

Predicted

synthetic growth defect

FSW = 0.0340

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT1G06380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2268

Unknown

RIBOSOMAL PROTEIN-RELATED
AT5G63980

Predicted

Affinity Capture-MS

FSW = 0.0126

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT2G42590

Predicted

Affinity Capture-MS

FSW = 0.0116

Unknown

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G43940

Predicted

Affinity Capture-MS

FSW = 0.0790

Unknown

HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE
AT5G39740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2086

Unknown

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.0138

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1992

Unknown

RNA BINDING
AT2G39460

Predicted

Affinity Capture-MS

FSW = 0.0591

Unknown

RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G33370Predicted

Affinity Capture-MS

FSW = 0.0997

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT3G02740

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

two hybrid

Affinity Capture-MS

Co-purification

FSW = 0.0901

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT2G37600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1470

Unknown

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G03540

Predicted

Phenotypic Suppression

FSW = 0.0181

Unknown

ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING
AT2G17440

Predicted

Affinity Capture-MS

FSW = 0.0056

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT1G70580

Predicted

Affinity Capture-MS

FSW = 0.0197

Unknown

AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT2G40360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2149

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G44860

Predicted

Affinity Capture-MS

FSW = 0.1498

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.2637

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G34450

Predicted

Affinity Capture-MS

FSW = 0.0087

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.1545

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G10300Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2113

Unknown

GTP-BINDING PROTEIN-RELATED
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1453

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G58660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2251

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT3G13445

Predicted

Affinity Capture-MS

FSW = 0.0269

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3681

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.1720

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G16810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3577

Unknown

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2557

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.0211

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT1G55520

Predicted

Affinity Capture-MS

FSW = 0.0084

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT3G18600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.1404

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G15550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2663

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G60850

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0218

Unknown

ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G30000

Predicted

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0679

Unknown

GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN
AT3G54840

Predicted

Reconstituted Complex

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Co-purification

Affinity Capture-Western

FSW = 0.0378

Unknown

ARA6 GTP BINDING / GTPASE
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.1072

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT3G52580

Predicted

Affinity Capture-MS

FSW = 0.0212

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT1G50920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2630

Unknown

GTP-BINDING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2148

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G02970

Predicted

Affinity Capture-Western

Dosage Growth Defect

FSW = 0.0152

Unknown

WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE
AT1G34580

Predicted

two hybrid

Reconstituted Complex

FSW = 0.0303

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G67300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0212

Unknown

HEXOSE TRANSPORTER PUTATIVE
AT2G01830

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0043

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G21440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3266

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G31970

Predicted

Affinity Capture-Western

FSW = 0.0121

Unknown

STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G59760

Predicted

Affinity Capture-Western

FSW = 0.0594

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT2G14880

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0366

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0035

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G46070

Predicted

Affinity Capture-Western

FSW = 0.0218

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT2G48100

Predicted

Affinity Capture-MS

FSW = 0.0109

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G06483

Predicted

biochemical

FSW = 0.0171

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G27000

Predicted

Synthetic Lethality

FSW = 0.0014

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G27440

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

two hybrid

FSW = 0.0402

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT4G34910

Predicted

Affinity Capture-Western

FSW = 0.1736

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G14520

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2896

Unknown

PESCADILLO-RELATED
AT5G26250

Predicted

Affinity Capture-Western

FSW = 0.0226

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G42600

Predicted

Affinity Capture-MS

FSW = 0.0129

Unknown

MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE
AT5G53940

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0901

Unknown

YIPPEE FAMILY PROTEIN
AT5G61770

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1804

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.1483

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G26500

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0042

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT3G46960Predicted

Affinity Capture-MS

Phenotypic Suppression

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0632

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G53510

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0131

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.1910

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G60860

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G15770

Predicted

Affinity Capture-MS

FSW = 0.2437

Unknown

RNA BINDING / PROTEIN BINDING
AT4G16630

Predicted

Affinity Capture-MS

FSW = 0.2900

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G39640

Predicted

two hybrid

FSW = 0.0206

Unknown

GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
AT5G38890

Predicted

Phenotypic Suppression

FSW = 0.0204

Unknown

EXORIBONUCLEASE-RELATED
AT5G46840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2206

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G65900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2696

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G09290

Predicted

Affinity Capture-MS

FSW = 0.0237

Unknown

3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE
AT1G36240

Predicted

Affinity Capture-MS

FSW = 0.0515

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G29965

Predicted

Affinity Capture-MS

FSW = 0.0989

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AA)
AT2G40010

Predicted

Affinity Capture-MS

FSW = 0.0101

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT1G04480Predicted

Affinity Capture-MS

FSW = 0.0918

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G01960

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0312

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454