Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G42600 - ( MRN1 (MARNERAL SYNTHASE) catalytic/ marneral synthase )
23 Proteins interacs with AT5G42600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16660 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MS | FSW = 0.0800
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT2G07050 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.6090
| Unknown | CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE |
AT3G62870 | PredictedSynthetic Rescue | FSW = 0.0131
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G02600 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2286
| Unknown | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE |
AT5G26340 | Predictedsynthetic growth defect | FSW = 0.0272
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G27440 | PredictedAffinity Capture-MS | FSW = 0.0331
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G20870 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2581
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0693
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT3G12670 | PredictedSynthetic Rescue | FSW = 0.0842
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT4G38250 | PredictedAffinity Capture-MS | FSW = 0.0716
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G36150 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7027
| Unknown | ATPEN3 (PUTATIVE PENTACYCLIC TRITERPENE SYNTHASE 3) CATALYTIC/ LUPEOL SYNTHASE |
AT5G48010 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4830
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT1G78960 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3806
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G78970 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2990
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G66960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5894
| Unknown | LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE |
AT4G15370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5709
| Unknown | BARS1 (BARUOL SYNTHASE 1) BARUOL SYNTHASE/ CATALYTIC |
AT1G78500 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7027
| Unknown | PENTACYCLIC TRITERPENE SYNTHASE PUTATIVE |
AT4G15340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7027
| Unknown | ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) ARABIDIOL SYNTHASE |
AT1G78950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7027
| Unknown | BETA-AMYRIN SYNTHASE PUTATIVE |
AT3G45130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7027
| Unknown | LAS1 LANOSTEROL SYNTHASE |
AT1G78955 | PredictedPhylogenetic profile method | FSW = 0.7027
| Unknown | CAMS1 (CAMELLIOL C SYNTHASE 1) BETA-AMYRIN SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454