Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48010 - ( THAS1 (THALIANOL SYNTHASE 1) catalytic/ thalianol synthase )
36 Proteins interacs with AT5G48010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G07050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4507
| Unknown | CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0256
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G07100 | Predictedtwo hybridtwo hybrid | FSW = 0.0188
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT5G01410 | PredictedSynthetic Lethality | FSW = 0.0180
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT1G02500 | PredictedReconstituted Complextwo hybridtwo hybridAffinity Capture-Westernfar western blottingReconstituted Complex | FSW = 0.0347
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT5G26340 | PredictedPhenotypic Enhancement | FSW = 0.0124
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G29960 | PredictedAffinity Capture-MSReconstituted ComplexColocalization | FSW = 0.1196
| Unknown | PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT4G16830 | PredictedReconstituted Complex | FSW = 0.0200
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G39160 | PredictedPhenotypic Enhancement | FSW = 0.0205
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G53530 | PredictedSynthetic Lethality | FSW = 0.0243
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT2G05170 | PredictedSynthetic Rescue | FSW = 0.0236
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT2G28060 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MStwo hybrid | FSW = 0.2227
| Unknown | PROTEIN KINASE-RELATED |
AT2G36930 | Predictedfar western blottingCo-crystal StructureReconstituted Complex | FSW = 0.0524
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G12620 | PredictedReconstituted ComplexReconstituted Complextwo hybridReconstituted Complextwo hybrid | FSW = 0.0540
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22330 | PredictedPhenotypic Enhancement | FSW = 0.0450
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0700
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G37880 | PredictedReconstituted Complextwo hybrid | FSW = 0.0563
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G13950 | PredictedSynthetic Lethality | FSW = 0.0265
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G33040 | PredictedSynthetic Lethality | FSW = 0.0080
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.0183
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.0337
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.0332
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G19880 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT3G45130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5200
| Unknown | LAS1 LANOSTEROL SYNTHASE |
AT5G42600 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4830
| Unknown | MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE |
AT4G15370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4225
| Unknown | BARS1 (BARUOL SYNTHASE 1) BARUOL SYNTHASE/ CATALYTIC |
AT1G66960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4361
| Unknown | LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE |
AT1G78500 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5200
| Unknown | PENTACYCLIC TRITERPENE SYNTHASE PUTATIVE |
AT1G78970 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2473
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT4G15340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5200
| Unknown | ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) ARABIDIOL SYNTHASE |
AT5G36150 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5200
| Unknown | ATPEN3 (PUTATIVE PENTACYCLIC TRITERPENE SYNTHASE 3) CATALYTIC/ LUPEOL SYNTHASE |
AT1G78960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3137
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G78950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5200
| Unknown | BETA-AMYRIN SYNTHASE PUTATIVE |
AT1G78955 | PredictedPhylogenetic profile method | FSW = 0.5200
| Unknown | CAMS1 (CAMELLIOL C SYNTHASE 1) BETA-AMYRIN SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454