Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53030 - ( SRPK4 (Ser/Arg-rich protein kinase 4) kinase/ protein kinase )

94 Proteins interacs with AT3G53030
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G61860

Experimental

biochemical

in vitro

FSW = 0.0110

Unknown

RSP31 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G16660

Predicted

synthetic growth defect

FSW = 0.1669

Unknown

HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT5G66680

Predicted

Synthetic Lethality

FSW = 0.0237

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT3G15710

Predicted

Synthetic Lethality

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1423

Unknown

SIGNAL PEPTIDASE PUTATIVE
AT3G28715

Predicted

Synthetic Lethality

FSW = 0.0525

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT4G01840

Predicted

Affinity Capture-MS

FSW = 0.0303

Unknown

KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT3G53740

Predicted

synthetic growth defect

FSW = 0.0231

Unknown

60S RIBOSOMAL PROTEIN L36 (RPL36B)
AT4G16780

Predicted

two hybrid

FSW = 0.0107

Unknown

ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) DNA BINDING / PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G74560

Predicted

Synthetic Lethality

FSW = 0.1182

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT3G22890

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.2034

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G09660

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.2014

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT1G74710

Predicted

Synthetic Lethality

FSW = 0.2398

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G16150

Predicted

Affinity Capture-Western

FSW = 0.0377

Unknown

PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G22170

Predicted

Synthetic Rescue

FSW = 0.0158

Unknown

PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT4G25910

Predicted

synthetic growth defect

FSW = 0.0944

Unknown

NFU3 STRUCTURAL MOLECULE
AT5G15450

Predicted

Synthetic Lethality

FSW = 0.1449

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G31810

Predicted

Affinity Capture-Western

FSW = 0.0594

Unknown

ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT5G03650

Predicted

synthetic growth defect

FSW = 0.0547

Unknown

SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT5G46110

Predicted

synthetic growth defect

FSW = 0.0509

Unknown

APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT5G60540

Predicted

synthetic growth defect

FSW = 0.1847

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT4G32360

Predicted

Synthetic Lethality

FSW = 0.0835

Unknown

NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE
AT5G56350

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0297

Unknown

PYRUVATE KINASE PUTATIVE
AT3G53890

Predicted

Affinity Capture-MS

FSW = 0.0190

Unknown

40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT1G20090

Predicted

Synthetic Lethality

FSW = 0.0813

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT1G04750

Predicted

synthetic growth defect

FSW = 0.2411

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G18800

Predicted

Synthetic Lethality

FSW = 0.1118

Unknown

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT2G17420

Predicted

Affinity Capture-Western

Affinity Capture-Western

synthetic growth defect

Synthetic Rescue

FSW = 0.1003

Unknown

NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE
AT1G21700

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1150

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G76300

Predicted

Synthetic Lethality

FSW = 0.0983

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT1G06960

Predicted

Affinity Capture-Western

interologs mapping

two hybrid

interologs mapping

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0867

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT1G72560

Predicted

Synthetic Lethality

FSW = 0.0394

Unknown

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G30160

Predicted

synthetic growth defect

FSW = 0.1359

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G35160

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0648

Unknown

LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G126501) HAS 1053 BLAST HITS TO 1004 PROTEINS IN 163 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 478 FUNGI - 143 PLANTS - 250 VIRUSES - 0 OTHER EUKARYOTES - 182 (SOURCE NCBI BLINK)
AT2G47990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0567

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT3G14290

Predicted

two hybrid

FSW = 0.0878

Unknown

PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G17190

Predicted

Synthetic Lethality

FSW = 0.1568

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G10210

Predicted

interologs mapping

FSW = 0.0599

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G13950

Predicted

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0920

Unknown

ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G15440

Predicted

Synthetic Lethality

FSW = 0.0405

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G20693

Predicted

synthetic growth defect

FSW = 0.2564

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G21370

Predicted

Synthetic Lethality

FSW = 0.2198

Unknown

UNKNOWN PROTEIN
AT1G25155Predicted

Synthetic Lethality

FSW = 0.2740

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G27040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1152

Unknown

NITRATE TRANSPORTER PUTATIVE
AT1G27080

Predicted

Synthetic Lethality

FSW = 0.0886

Unknown

NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G34340

Predicted

synthetic growth defect

FSW = 0.0336

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G34580

Predicted

synthetic growth defect

Affinity Capture-Western

FSW = 0.0885

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G35350

Predicted

synthetic growth defect

FSW = 0.2618

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G44180

Predicted

synthetic growth defect

FSW = 0.1761

Unknown

AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G47830

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2000

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G55300

Predicted

Synthetic Lethality

FSW = 0.1310

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G55810

Predicted

Synthetic Lethality

FSW = 0.0405

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G56090

Predicted

Synthetic Lethality

FSW = 0.0455

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G77780

Predicted

Synthetic Lethality

Affinity Capture-Western

Synthetic Lethality

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1305

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT1G78770

Predicted

Synthetic Lethality

FSW = 0.1930

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT2G03250

Predicted

synthetic growth defect

FSW = 0.1996

Unknown

EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN
AT2G15230

Predicted

Synthetic Lethality

FSW = 0.0136

Unknown

ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE
AT2G24960

Predicted

Synthetic Lethality

FSW = 0.1435

Unknown

UNKNOWN PROTEIN
AT2G35390

Predicted

interologs mapping

interologs mapping

FSW = 0.0460

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G36930

Predicted

synthetic growth defect

FSW = 0.0170

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G37420

Predicted

synthetic growth defect

FSW = 0.1555

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G02000

Predicted

synthetic growth defect

FSW = 0.0614

Unknown

ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G03380

Predicted

Synthetic Lethality

FSW = 0.0367

Unknown

DEGP7 (DEGP PROTEASE 7) CATALYTIC/ PROTEIN BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE
AT3G06460

Predicted

Synthetic Lethality

FSW = 0.0513

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G11290

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0866

Unknown

UNKNOWN PROTEIN
AT3G21460

Predicted

Synthetic Lethality

FSW = 0.1323

Unknown

ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G22290

Predicted

synthetic growth defect

FSW = 0.2820

Unknown

UNKNOWN PROTEIN
AT3G24010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

two hybrid

Affinity Capture-Western

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

two hybrid

interologs mapping

Co-purification

co-fractionation

Co-fractionation

FSW = 0.6930

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G26690

Predicted

synthetic growth defect

FSW = 0.0286

Unknown

ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE
AT3G51880

Predicted

synthetic growth defect

FSW = 0.0267

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G11510

Predicted

synthetic growth defect

FSW = 0.2017

Unknown

DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G26690

Predicted

synthetic growth defect

FSW = 0.1561

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G34460Predicted

interologs mapping

FSW = 0.0495

Unknown

CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G66590

Predicted

synthetic growth defect

FSW = 0.1834

Unknown

COX19 FAMILY PROTEIN
AT2G32415

Predicted

Affinity Capture-Western

biochemical

FSW = 0.0170

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT4G21490

Predicted

Synthetic Lethality

FSW = 0.2553

Unknown

NDB3 NADH DEHYDROGENASE
AT4G27130

Predicted

synthetic growth defect

FSW = 0.2570

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G01770

Predicted

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.1848

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G06150

Predicted

Synthetic Lethality

Synthetic Lethality

biochemical

FSW = 0.0360

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G16980

Predicted

Synthetic Lethality

FSW = 0.2500

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G45620

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.2634

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT3G58490

Predicted

synthetic growth defect

FSW = 0.0141

Unknown

PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN
AT4G12620

Predicted

Synthetic Lethality

FSW = 0.0792

Unknown

ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G16360

Predicted

synthetic growth defect

FSW = 0.0269

Unknown

AMP-ACTIVATED PROTEIN KINASE
AT4G26510

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0470

Unknown

ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT5G04420

Predicted

synthetic growth defect

FSW = 0.0215

Unknown

KELCH REPEAT-CONTAINING PROTEIN
AT5G10960

Predicted

Synthetic Lethality

FSW = 0.0036

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G14060

Predicted

synthetic growth defect

FSW = 0.1603

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G48010

Predicted

synthetic growth defect

FSW = 0.0332

Unknown

THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE
AT5G49970

Predicted

Synthetic Lethality

FSW = 0.2507

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G53120

Predicted

synthetic growth defect

FSW = 0.0478

Unknown

SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE
AT3G44850

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0417

Unknown

PROTEIN KINASE-RELATED
AT2G17530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0476

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G22840

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0210

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G35500

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0625

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454