Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G15230 - ( ATLIP1 (Arabidopsis thaliana lipase 1) galactolipase/ hydrolase/ phospholipase/ triacylglycerol lipase )
23 Proteins interacs with AT2G15230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0418
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G62870 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0157
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G57870 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2286
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT2G06850 | Predictedtwo hybridAffinity Capture-MSinterologs mapping | FSW = 0.1724
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT2G33340 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationPhenotypic Suppression | FSW = 0.0378
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G51460 | Predictedinterologs mapping | FSW = 0.0261
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT1G04750 | Predictedsynthetic growth defect | FSW = 0.0481
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G07180 | Predictedinterologs mapping | FSW = 0.0706
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0136
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G20970 | PredictedSynthetic Lethality | FSW = 0.0322
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G18480 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0593
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0442
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G03950 | Predictedtwo hybridReconstituted Complex | FSW = 0.0237
| Unknown | PROTEIN BINDING |
AT1G27880 | Predictedtwo hybrid | FSW = 0.0833
| Unknown | ATP-DEPENDENT DNA HELICASE PUTATIVE |
AT1G53710 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0222
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT2G34770 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0150
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G46710 | Predictedinterologs mappingAffinity Capture-Westerninterologs mappingtwo hybridAffinity Capture-MStwo hybridReconstituted Complexinterologs mappingAffinity Capture-WesternCo-purification | FSW = 0.0821
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT2G47830 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2342
| Unknown | CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1) |
AT3G53030 | PredictedSynthetic Lethality | FSW = 0.0136
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT5G05070 | PredictedSynthetic Lethality | FSW = 0.1664
| Unknown | ZINC ION BINDING |
AT5G14180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0371
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454