AtPIN will be upgraded. Please send your suggestions here

AT1G04750 - ( VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) )

194 Proteins interacs with AT1G04750

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G33120	Predicted Phylogenetic profile method	FSW = 0.1538	Class C: plasma membrane	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT3G09630	Predicted Phenotypic Suppression	FSW = 0.0743	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G17360	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1010	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT4G32150	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0882	Class C: plasma membrane	ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)
AT3G56190	Predicted Reconstituted Complex	FSW = 0.0228	Class C: plasma membrane	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT3G28715	Predicted synthetic growth defect	FSW = 0.0586	Class C: plasma membrane	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT3G44310	Predicted Phenotypic Enhancement	FSW = 0.0146	Class C: plasma membrane	NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT1G72370	Predicted Synthetic Lethality	FSW = 0.0294	Class C: plasma membrane	P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G22890	Predicted synthetic growth defect synthetic growth defect	FSW = 0.2634	Class C: plasma membrane	APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT3G08530	Predicted Synthetic Lethality	FSW = 0.0261	Class C: plasma membrane	CLATHRIN HEAVY CHAIN PUTATIVE
AT1G04760	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0976	Class C: plasma membrane	ATVAMP726
AT5G60540	Predicted synthetic growth defect	FSW = 0.2897	Class C: plasma membrane	PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT3G48930	Predicted biochemical	FSW = 0.0225	Class C: plasma membrane	EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G02500	Predicted Synthetic Lethality	FSW = 0.0152	Class C: plasma membrane	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT1G08560	Predicted Affinity Capture-Western Affinity Capture-Western Enriched domain pair Co-expression	FSW = 0.0179	Class C: plasma membrane	SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR
AT2G21540	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0545	Class C: plasma membrane	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT1G27450	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.0500	Class C: plasma membrane	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT1G20090	Predicted synthetic growth defect	FSW = 0.0542	Class C: plasma membrane	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT4G04340	Predicted Phenotypic Enhancement	FSW = 0.1758	Class C: plasma membrane	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT5G40370	Predicted Synthetic Lethality	FSW = 0.0243	Class C: plasma membrane	GLUTAREDOXIN PUTATIVE
AT1G32090	Predicted Phenotypic Enhancement	FSW = 0.0427	Class C: plasma membrane	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G33090	Predicted Phenotypic Suppression	FSW = 0.1236	Class C: plasma membrane	APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT4G15000	Predicted Phenotypic Enhancement	FSW = 0.0295	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G06110	Predicted synthetic growth defect	FSW = 0.0113	Class C: plasma membrane	MKP2 (MAPK PHOSPHATASE 2) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE
AT4G15780	Predicted Phylogenetic profile method Co-expression	FSW = 0.0843	Class C: plasma membrane	ATVAMP724
AT4G18800	Predicted Phenotypic Suppression	FSW = 0.2111	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT3G49370	Predicted Phenotypic Enhancement	FSW = 0.0485	Class C: plasma membrane	CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT3G16480	Predicted Affinity Capture-MS	FSW = 0.0241	Unknown	MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT3G47520	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0465	Unknown	MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590	Predicted Phenotypic Enhancement	FSW = 0.1974	Unknown	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G16660	Predicted Phenotypic Enhancement	FSW = 0.1907	Unknown	HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT1G20260	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1959	Unknown	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G22360	Predicted Phylogenetic profile method Co-expression	FSW = 0.0794	Unknown	ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)
AT2G25340	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0697	Unknown	ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)
AT5G11150	Predicted Phylogenetic profile method Co-expression	FSW = 0.0673	Unknown	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)
AT3G26590	Predicted biochemical	FSW = 0.0313	Unknown	MATE EFFLUX FAMILY PROTEIN
AT5G20020	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0047	Unknown	RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G29210	Predicted synthetic growth defect	FSW = 0.0840	Unknown	GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
AT5G57870	Predicted synthetic growth defect	FSW = 0.0285	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT3G48170	Predicted Phenotypic Enhancement	FSW = 0.1752	Unknown	ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G09660	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Synthetic Lethality Affinity Capture-Western Affinity Capture-MS Phenotypic Enhancement	FSW = 0.3574	Unknown	PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT1G74710	Predicted synthetic growth defect	FSW = 0.2194	Unknown	ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G65430	Predicted synthetic growth defect	FSW = 0.1077	Unknown	GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G58610	Predicted Synthetic Lethality	FSW = 0.1926	Unknown	KETOL-ACID REDUCTOISOMERASE
AT5G54770	Predicted Phenotypic Enhancement Synthetic Lethality Synthetic Lethality Synthetic Lethality interologs mapping synthetic growth defect	FSW = 0.0909	Unknown	THI1 PROTEIN HOMODIMERIZATION
AT5G06290	Predicted biochemical	FSW = 0.0401	Unknown	2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT1G64190	Predicted Phenotypic Enhancement Phenotypic Suppression	FSW = 0.1476	Unknown	6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G51040	Predicted interologs mapping	FSW = 0.0335	Unknown	PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT5G15450	Predicted synthetic growth defect	FSW = 0.2125	Unknown	CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G14320	Predicted Affinity Capture-Western	FSW = 0.0175	Unknown	30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT1G21640	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect	FSW = 0.0436	Unknown	NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT4G19490	Predicted Affinity Capture-Western	FSW = 0.0326	Unknown	PROTEIN BINDING
AT2G43030	Predicted Phenotypic Enhancement	FSW = 0.0790	Unknown	RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT1G48860	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2563	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT1G12900	Predicted Phenotypic Enhancement	FSW = 0.0305	Unknown	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G03650	Predicted synthetic growth defect	FSW = 0.0680	Unknown	SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT5G46110	Predicted synthetic growth defect	FSW = 0.0335	Unknown	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT1G07180	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0494	Unknown	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT4G28860	Predicted Phenotypic Enhancement	FSW = 0.0813	Unknown	CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G13980	Predicted biochemical	FSW = 0.0332	Unknown	AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT1G76300	Predicted synthetic growth defect	FSW = 0.0811	Unknown	SMD3 (SNRNP CORE PROTEIN SMD3)
AT1G06960	Predicted Reconstituted Complex	FSW = 0.0895	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT2G36170	Predicted Synthetic Lethality Phenotypic Enhancement Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Synthetic Lethality	FSW = 0.0884	Unknown	UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT3G57300	Predicted Phenotypic Suppression	FSW = 0.0320	Unknown	INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G21700	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Suppression Phenotypic Enhancement synthetic growth defect	FSW = 0.2163	Unknown	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G28460	Predicted synthetic growth defect	FSW = 0.1702	Unknown	AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT1G55520	Predicted synthetic growth defect	FSW = 0.0028	Unknown	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT4G25340	Predicted synthetic growth defect	FSW = 0.1844	Unknown	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT3G01020	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0611	Unknown	ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE
AT2G30160	Predicted synthetic growth defect	FSW = 0.2797	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT1G28490	Predicted Affinity Capture-Western synthetic growth defect Enriched domain pair Co-expression	FSW = 0.0398	Unknown	SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT3G18480	Predicted Phenotypic Enhancement	FSW = 0.0990	Unknown	ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT1G64880	Predicted Synthetic Lethality	FSW = 0.1699	Unknown	RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT4G33710	Predicted Reconstituted Complex Phenotypic Enhancement	FSW = 0.0920	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G54840	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.2477	Unknown	ARA6 GTP BINDING / GTPASE
AT1G27980	Predicted interologs mapping	FSW = 0.0153	Unknown	DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING
AT3G05710	Predicted synthetic growth defect Enriched domain pair Co-expression	FSW = 0.0264	Unknown	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT3G54300	Predicted Phylogenetic profile method Co-expression	FSW = 0.0534	Unknown	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)
AT2G33110	Predicted Phylogenetic profile method	FSW = 0.0313	Unknown	ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)
AT2G38960	Predicted biochemical	FSW = 0.0210	Unknown	AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT3G02560	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality interologs mapping	FSW = 0.0500	Unknown	40S RIBOSOMAL PROTEIN S7 (RPS7B)
AT3G60360	Predicted Synthetic Lethality	FSW = 0.1752	Unknown	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT4G39200	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.3327	Unknown	40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT4G27070	Predicted Phenotypic Enhancement	FSW = 0.1144	Unknown	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT1G62800	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2146	Unknown	ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT2G47990	Predicted Affinity Capture-Western Co-purification	FSW = 0.0387	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT2G14620	Predicted Synthetic Lethality	FSW = 0.0054	Unknown	XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE
AT3G19510	Predicted Phenotypic Enhancement	FSW = 0.0278	Unknown	HAT31 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G77990	Predicted Affinity Capture-Western	FSW = 0.0779	Unknown	AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT2G05170	Predicted Synthetic Rescue Phenotypic Suppression	FSW = 0.1134	Unknown	ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT1G05180	Predicted Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.1726	Unknown	AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT4G17190	Predicted synthetic growth defect	FSW = 0.1988	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G10920	Predicted Affinity Capture-MS	FSW = 0.0485	Unknown	KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G07820	Predicted Synthetic Lethality	FSW = 0.0867	Unknown	HISTONE H4
AT1G09270	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0956	Unknown	IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G10090	Predicted Synthetic Lethality synthetic growth defect Synthetic Lethality Phenotypic Enhancement interologs mapping	FSW = 0.1538	Unknown	UNKNOWN PROTEIN
AT1G11510	Predicted synthetic growth defect	FSW = 0.2342	Unknown	DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G20693	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.3206	Unknown	HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155	Predicted synthetic growth defect	FSW = 0.2741	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G26320	Predicted Phenotypic Enhancement	FSW = 0.1590	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G26690	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2363	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G29970	Predicted Phenotypic Suppression	FSW = 0.1008	Unknown	RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G35350	Predicted synthetic growth defect Synthetic Lethality Synthetic Lethality	FSW = 0.3514	Unknown	LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G44180	Predicted synthetic growth defect Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2171	Unknown	AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G47830	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.3399	Unknown	CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G54560	Predicted biochemical	FSW = 0.0783	Unknown	XIE MOTOR/ PROTEIN BINDING
AT1G59580	Predicted Phenotypic Enhancement	FSW = 0.0237	Unknown	ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT1G66590	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect	FSW = 0.2237	Unknown	COX19 FAMILY PROTEIN
AT1G78770	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect	FSW = 0.2675	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT2G32160	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.0811	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK)
AT2G34180	Predicted synthetic growth defect	FSW = 0.0247	Unknown	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G01100	Predicted Phenotypic Enhancement	FSW = 0.1653	Unknown	HYP1 (HYPOTHETICAL PROTEIN 1)
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.0328	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G18660	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1756	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22290	Predicted Phenotypic Enhancement synthetic growth defect Synthetic Lethality Synthetic Lethality	FSW = 0.3701	Unknown	UNKNOWN PROTEIN
AT3G24010	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2192	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G25900	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2769	Unknown	HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G45240	Predicted synthetic growth defect Synthetic Lethality Phenotypic Enhancement	FSW = 0.2410	Unknown	GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G47290	Predicted synthetic growth defect Synthetic Lethality Phenotypic Enhancement Synthetic Lethality Phenotypic Suppression	FSW = 0.1670	Unknown	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT3G47610	Predicted interologs mapping Synthetic Lethality interologs mapping interologs mapping interologs mapping Synthetic Lethality synthetic growth defect	FSW = 0.1775	Unknown	TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G53030	Predicted synthetic growth defect	FSW = 0.2411	Unknown	SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G04695	Predicted synthetic growth defect	FSW = 0.1129	Unknown	CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G14240	Predicted biochemical	FSW = 0.0112	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT4G21490	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.3305	Unknown	NDB3 NADH DEHYDROGENASE
AT4G25950	Predicted Phenotypic Suppression synthetic growth defect	FSW = 0.0785	Unknown	VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G27130	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.4412	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G29580	Predicted synthetic growth defect	FSW = 0.2338	Unknown	CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G04800	Predicted Phenotypic Enhancement	FSW = 0.1143	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G05070	Predicted Phenotypic Enhancement	FSW = 0.0397	Unknown	ZINC ION BINDING
AT5G08160	Predicted Synthetic Lethality	FSW = 0.0371	Unknown	ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G16170	Predicted synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.1790	Unknown	UNKNOWN PROTEIN
AT5G16980	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.3680	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G17860	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Phenotypic Suppression	FSW = 0.2233	Unknown	CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G20340	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.2359	Unknown	BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G20560	Predicted Affinity Capture-MS	FSW = 0.0497	Unknown	BETA-13-GLUCANASE PUTATIVE
AT5G24840	Predicted Affinity Capture-MS	FSW = 0.0983	Unknown	TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G38890	Predicted Phenotypic Enhancement	FSW = 0.0581	Unknown	EXORIBONUCLEASE-RELATED
AT5G41700	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0910	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42720	Predicted synthetic growth defect	FSW = 0.1901	Unknown	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G45620	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.3876	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G54940	Predicted Phenotypic Enhancement	FSW = 0.0794	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G61010	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1503	Unknown	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING
AT5G66640	Predicted biochemical	FSW = 0.0310	Unknown	DAR3 (DA1-RELATED PROTEIN 3)
AT1G13580	Predicted Phenotypic Suppression	FSW = 0.1921	Unknown	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G15440	Predicted synthetic growth defect	FSW = 0.0623	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G19750	Predicted Phenotypic Suppression	FSW = 0.1010	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G21370	Predicted Synthetic Lethality	FSW = 0.1967	Unknown	UNKNOWN PROTEIN
AT1G23460	Predicted Phenotypic Enhancement	FSW = 0.1420	Unknown	POLYGALACTURONASE
AT1G34580	Predicted Phenotypic Suppression	FSW = 0.1172	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G60680	Predicted synthetic growth defect	FSW = 0.1383	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G68020	Predicted Phenotypic Suppression	FSW = 0.2054	Unknown	ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G03130	Predicted Phenotypic Enhancement	FSW = 0.2626	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G03250	Predicted synthetic growth defect	FSW = 0.1618	Unknown	EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN
AT2G15230	Predicted synthetic growth defect	FSW = 0.0481	Unknown	ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE
AT2G15910	Predicted Phenotypic Suppression	FSW = 0.1581	Unknown	CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G19220	Predicted Phenotypic Enhancement	FSW = 0.0671	Unknown	UNKNOWN PROTEIN
AT2G32050	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0574	Unknown	CELL CYCLE CONTROL PROTEIN-RELATED
AT2G37420	Predicted synthetic growth defect	FSW = 0.3029	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G37925	Predicted synthetic growth defect	FSW = 0.0650	Unknown	COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT2G38490	Predicted Phenotypic Enhancement	FSW = 0.1071	Unknown	CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G02000	Predicted Phenotypic Suppression	FSW = 0.1642	Unknown	ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G03080	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1148	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G12200	Predicted Affinity Capture-Western	FSW = 0.1942	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G13210	Predicted Phenotypic Enhancement	FSW = 0.1037	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G18850	Predicted Phenotypic Enhancement	FSW = 0.1179	Unknown	LPAT5 ACYLTRANSFERASE
AT3G19190	Predicted Synthetic Lethality	FSW = 0.0113	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATG2 C-TERMINAL (INTERPROIPR015412) HAS 603 BLAST HITS TO 514 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 19 METAZOA - 326 FUNGI - 168 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK)
AT3G21460	Predicted synthetic growth defect	FSW = 0.1493	Unknown	ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G59540	Predicted Phenotypic Suppression	FSW = 0.1805	Unknown	60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G60240	Predicted Synthetic Lethality	FSW = 0.0087	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G00800	Predicted synthetic growth defect	FSW = 0.1412	Unknown	BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G12790	Predicted Synthetic Lethality	FSW = 0.0192	Unknown	ATP-BINDING FAMILY PROTEIN
AT4G13020	Predicted Phenotypic Enhancement	FSW = 0.0930	Unknown	MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G19560	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1901	Unknown	CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G22140	Predicted synthetic growth defect	FSW = 0.0599	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G36070	Predicted Phenotypic Suppression	FSW = 0.0533	Unknown	CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G01430	Predicted synthetic growth defect	FSW = 0.2017	Unknown	GOT1-LIKE FAMILY PROTEIN
AT5G01770	Predicted Phenotypic Enhancement Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Phenotypic Enhancement	FSW = 0.3322	Unknown	RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G07950	Predicted synthetic growth defect	FSW = 0.0299	Unknown	UNKNOWN PROTEIN
AT5G11500	Predicted Phenotypic Enhancement	FSW = 0.1350	Unknown	UNKNOWN PROTEIN
AT5G13860	Predicted Affinity Capture-Western Phenotypic Suppression	FSW = 0.1417	Unknown	ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G14060	Predicted synthetic growth defect Phenotypic Suppression	FSW = 0.2711	Unknown	CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G17000	Predicted Affinity Capture-MS	FSW = 0.0360	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G26250	Predicted synthetic growth defect	FSW = 0.0661	Unknown	SUGAR TRANSPORTER PUTATIVE
AT5G44830	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2479	Unknown	GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G57890	Predicted Synthetic Lethality	FSW = 0.0175	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT5G58180	Predicted interologs mapping	FSW = 0.0611	Unknown	ATYKT62
AT2G17980	Predicted Affinity Capture-Western	FSW = 0.0092	Unknown	ATSLY1 PROTEIN TRANSPORTER
AT3G13235	Predicted Affinity Capture-Western Affinity Capture-Western	FSW = 0.0263	Unknown	UBIQUITIN FAMILY PROTEIN
AT1G32270	Predicted Affinity Capture-Western Synthetic Lethality Enriched domain pair Co-expression	FSW = 0.0239	Unknown	ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING
AT1G02010	Predicted Affinity Capture-Western interologs mapping	FSW = 0.0055	Unknown	SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER
AT5G06140	Predicted Affinity Capture-Western	FSW = 0.0161	Unknown	SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT1G50370	Predicted interologs mapping	FSW = 0.0183	Unknown	SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT3G06460	Predicted interologs mapping	FSW = 0.0516	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G60490	Predicted Synthetic Lethality	FSW = 0.0161	Unknown	ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G04750 - ( VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown