Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G02010 - ( SEC1A (SIMILAR TO ELECTRON CAREER 1A) protein transporter )
29 Proteins interacs with AT1G02010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02130 | PredictedSynthetic Lethality | FSW = 0.0847
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT1G12360 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4776
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT4G04910 | PredictedPhenotypic Suppression | FSW = 0.0506
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G08560 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic Rescuetwo hybridEnriched domain pair | FSW = 0.1379
| Unknown | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
AT5G42740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0941
| Unknown | GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC) |
AT1G19650 | PredictedPhenotypic Suppression | FSW = 0.1046
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT4G12120 | PredictedPhylogenetic profile method | FSW = 0.2041
| Unknown | SEC1B PROTEIN TRANSPORTER |
AT1G04750 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0055
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | ATGCN1 TRANSPORTER |
AT3G09900 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.1190
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT1G71820 | PredictedSynthetic LethalityPhenotypic Suppression | FSW = 0.1768
| Unknown | SEC6 |
AT1G20970 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1643
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT2G19760 | PredictedSynthetic Lethality | FSW = 0.0672
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0428
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT2G30050 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G31720 | PredictedSynthetic Lethality | FSW = 0.0196
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT5G40820 | PredictedSynthetic Lethality | FSW = 0.0158
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT2G28820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0672
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT3G56640 | PredictedSynthetic LethalityAffinity Capture-Westerninterologs mapping | FSW = 0.2394
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT1G54090 | Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.1853
| Unknown | ATEXO70D2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2) PROTEIN BINDING |
AT2G44100 | PredictedSynthetic Lethality | FSW = 0.1176
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
AT5G54750 | PredictedSynthetic Lethality | FSW = 0.1375
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.0227
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT2G34980 | PredictedSynthetic Lethality | FSW = 0.0357
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT1G69070 | PredictedSynthetic Lethality | FSW = 0.0163
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT3G56120 | PredictedSynthetic Lethality | FSW = 0.0683
| Unknown | MET-10+ LIKE FAMILY PROTEIN |
AT2G26060 | PredictedSynthetic Lethality | FSW = 0.0295
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
AT1G54390 | PredictedSynthetic Lethality | FSW = 0.0281
| Unknown | PHD FINGER PROTEIN-RELATED |
AT5G22480 | PredictedSynthetic Lethality | FSW = 0.0248
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454