Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26060 - ( emb1345 (embryo defective 1345) nucleotide binding )
33 Proteins interacs with AT2G26060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01100 | PredictedGene fusion method | FSW = 0.0249
| Unknown | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING |
AT1G12360 | PredictedSynthetic Lethality | FSW = 0.0195
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT1G18080 | PredictedPhylogenetic profile method | FSW = 0.0389
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT1G60550 | PredictedGene fusion method | FSW = 0.0515
| Unknown | ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) CATALYTIC/ NAPHTHOATE SYNTHASE |
AT3G18130 | PredictedPhylogenetic profile method | FSW = 0.0309
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT5G09470 | PredictedGene fusion method | FSW = 0.1832
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G37890 | PredictedGene fusion method | FSW = 0.2650
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G21160 | PredictedGene fusion method | FSW = 0.0991
| Unknown | ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING |
AT1G68310 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-MStwo hybridtwo hybrid | FSW = 0.0510
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT2G07690 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT3G50845 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF59 (INTERPROIPR002744) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS VACUOLAR SORTING SIGNAL BINDING (TAIRAT1G683102) HAS 415 BLAST HITS TO 414 PROTEINS IN 153 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 216 FUNGI - 86 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 72 (SOURCE NCBI BLINK) |
AT3G11270 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT4G16440 | PredictedAffinity Capture-Western | FSW = 0.0463
| Unknown | FERREDOXIN HYDROGENASE |
AT5G48120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0141
| Unknown | BINDING |
AT1G02010 | PredictedSynthetic Lethality | FSW = 0.0295
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT5G60940 | PredictedGene fusion methodCo-expression | FSW = 0.1286
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G48630 | PredictedPhylogenetic profile method | FSW = 0.1221
| Unknown | RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) NUCLEOTIDE BINDING |
AT4G32990 | PredictedPhylogenetic profile method | FSW = 0.0649
| Unknown | NUCLEOTIDE BINDING |
AT4G02730 | PredictedPhylogenetic profile method | FSW = 0.1166
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G35390 | PredictedGene fusion methodGene neighbors method | FSW = 0.0027
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT1G55510 | PredictedGene fusion method | FSW = 0.0250
| Unknown | BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE (2-METHYLPROPANOYL-TRANSFERRING)/ CATALYTIC |
AT1G08290 | PredictedGene fusion method | FSW = 0.4318
| Unknown | ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3) |
AT5G19960 | PredictedGene fusion method | FSW = 0.1622
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G23240 | PredictedGene fusion method | FSW = 0.0572
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G47120 | PredictedGene fusion method | FSW = 0.0081
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G46760 | PredictedGene fusion method | FSW = 0.1390
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G51220 | PredictedGene fusion method | FSW = 0.0504
| Unknown | ZINC FINGER (C2H2 TYPE) PROTEIN (WIP5) |
AT5G24760 | PredictedGene fusion method | FSW = 0.0342
| Unknown | ALCOHOL DEHYDROGENASE PUTATIVE |
AT3G59960 | PredictedGene fusion method | FSW = 0.1111
| Unknown | ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT1G12760 | PredictedGene fusion method | FSW = 0.0504
| Unknown | PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT4G11890 | PredictedGene fusion method | FSW = 0.1216
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G63220 | PredictedGene fusion method | FSW = 0.0635
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT2G20560 | PredictedGene fusion method | FSW = 0.0693
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454