Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26060 - ( emb1345 (embryo defective 1345) nucleotide binding )

33 Proteins interacs with AT2G26060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01100

Predicted

Gene fusion method

FSW = 0.0249

Unknown

ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT1G12360

Predicted

Synthetic Lethality

FSW = 0.0195

Unknown

KEU (KEULE) PROTEIN TRANSPORTER
AT1G18080

Predicted

Phylogenetic profile method

FSW = 0.0389

Unknown

ATARCA NUCLEOTIDE BINDING
AT1G60550

Predicted

Gene fusion method

FSW = 0.0515

Unknown

ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) CATALYTIC/ NAPHTHOATE SYNTHASE
AT3G18130

Predicted

Phylogenetic profile method

FSW = 0.0309

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT5G09470

Predicted

Gene fusion method

FSW = 0.1832

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G37890

Predicted

Gene fusion method

FSW = 0.2650

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G21160

Predicted

Gene fusion method

FSW = 0.0991

Unknown

ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING
AT1G68310

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

two hybrid

two hybrid

FSW = 0.0510

Unknown

VACUOLAR SORTING SIGNAL BINDING
AT2G07690

Predicted

Affinity Capture-MS

FSW = 0.0216

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT3G50845

Predicted

two hybrid

FSW = 0.0262

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF59 (INTERPROIPR002744) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS VACUOLAR SORTING SIGNAL BINDING (TAIRAT1G683102) HAS 415 BLAST HITS TO 414 PROTEINS IN 153 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 216 FUNGI - 86 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 72 (SOURCE NCBI BLINK)
AT3G11270

Predicted

Affinity Capture-MS

FSW = 0.0073

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT4G16440

Predicted

Affinity Capture-Western

FSW = 0.0463

Unknown

FERREDOXIN HYDROGENASE
AT5G48120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0141

Unknown

BINDING
AT1G02010

Predicted

Synthetic Lethality

FSW = 0.0295

Unknown

SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER
AT5G60940

Predicted

Gene fusion method

Co-expression

FSW = 0.1286

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G48630

Predicted

Phylogenetic profile method

FSW = 0.1221

Unknown

RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) NUCLEOTIDE BINDING
AT4G32990Predicted

Phylogenetic profile method

FSW = 0.0649

Unknown

NUCLEOTIDE BINDING
AT4G02730

Predicted

Phylogenetic profile method

FSW = 0.1166

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G35390

Predicted

Gene fusion method

Gene neighbors method

FSW = 0.0027

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT1G55510

Predicted

Gene fusion method

FSW = 0.0250

Unknown

BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE (2-METHYLPROPANOYL-TRANSFERRING)/ CATALYTIC
AT1G08290

Predicted

Gene fusion method

FSW = 0.4318

Unknown

ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3)
AT5G19960

Predicted

Gene fusion method

FSW = 0.1622

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G23240

Predicted

Gene fusion method

FSW = 0.0572

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G47120

Predicted

Gene fusion method

FSW = 0.0081

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G46760

Predicted

Gene fusion method

FSW = 0.1390

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G51220

Predicted

Gene fusion method

FSW = 0.0504

Unknown

ZINC FINGER (C2H2 TYPE) PROTEIN (WIP5)
AT5G24760

Predicted

Gene fusion method

FSW = 0.0342

Unknown

ALCOHOL DEHYDROGENASE PUTATIVE
AT3G59960

Predicted

Gene fusion method

FSW = 0.1111

Unknown

ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4) HISTONE-LYSINE N-METHYLTRANSFERASE
AT1G12760

Predicted

Gene fusion method

FSW = 0.0504

Unknown

PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G11890

Predicted

Gene fusion method

FSW = 0.1216

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G63220

Predicted

Gene fusion method

FSW = 0.0635

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT2G20560

Predicted

Gene fusion method

FSW = 0.0693

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454