Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18080 - ( ATARCA nucleotide binding )

60 Proteins interacs with AT1G18080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G52140Predicted

Affinity Capture-MS

FSW = 0.0329

Class C:

plastid

plasma membrane

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT2G47250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0214

Class C:

plastid

RNA HELICASE PUTATIVE
AT3G49830

Predicted

Affinity Capture-MS

FSW = 0.0050

Class C:

plastid

DNA HELICASE-RELATED
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.0113

Class C:

plasma membrane

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G39460

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0352

Class C:

plasma membrane

RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G79930

Predicted

interaction prediction

FSW = 0.0506

Class C:

plasma membrane

HSP91 ATP BINDING
AT5G25780

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0154

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT2G06510

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0151

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT1G04290

Predicted

two hybrid

two hybrid

FSW = 0.0212

Unknown

THIOESTERASE FAMILY PROTEIN
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0202

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT3G18130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4517

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT3G56990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0488

Unknown

EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT1G21690

Predicted

Gene fusion method

FSW = 0.0176

Unknown

EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G03190

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0097

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G56110

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0530

Unknown

NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT1G04510

Predicted

Co-purification

Co-expression

FSW = 0.0026

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G62310

Predicted

interaction prediction

FSW = 0.0334

Unknown

RNA HELICASE PUTATIVE
AT3G12860

Predicted

interaction prediction

FSW = 0.0655

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0468

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT1G69220

Predicted

two hybrid

FSW = 0.0060

Unknown

SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G34065

Predicted

Gene fusion method

FSW = 0.0205

Unknown

SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING
AT1G16470

Predicted

two hybrid

FSW = 0.0297

Unknown

PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G77670

Predicted

two hybrid

two hybrid

FSW = 0.0194

Unknown

AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN
AT1G79210

Predicted

two hybrid

FSW = 0.0247

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT2G36300

Predicted

two hybrid

two hybrid

FSW = 0.0049

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT5G08415

Predicted

Affinity Capture-MS

FSW = 0.0331

Unknown

LIPOIC ACID SYNTHASE FAMILY PROTEIN
AT5G41190

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0309

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT3G24080

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0723

Unknown

KRR1 FAMILY PROTEIN
AT5G60040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0156

Unknown

NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING
AT5G13780

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0483

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G11900

Predicted

Affinity Capture-MS

FSW = 0.0194

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT5G08420

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0640

Unknown

RNA BINDING
AT3G60240

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0090

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT3G11450

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0670

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT1G80410

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0456

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G54510

Predicted

Affinity Capture-MS

FSW = 0.0335

Unknown

ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G31660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0666

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G11660

Predicted

Affinity Capture-MS

FSW = 0.0467

Unknown

HEAT SHOCK PROTEIN PUTATIVE
AT2G44580

Predicted

synthetic growth defect

FSW = 0.0227

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G55255Predicted

synthetic growth defect

FSW = 0.0095

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G10930

Predicted

synthetic growth defect

FSW = 0.0251

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G04730Predicted

synthetic growth defect

Co-expression

FSW = 0.0361

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT3G59410

Predicted

Synthetic Rescue

FSW = 0.0106

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G27560

Predicted

two hybrid

FSW = 0.0155

Unknown

GLYCOSYLTRANSFERASE FAMILY PROTEIN
AT3G07790

Predicted

two hybrid

FSW = 0.0181

Unknown

DGCR14-RELATED
AT1G24706

Predicted

two hybrid

FSW = 0.0133

Unknown

UNKNOWN PROTEIN
AT5G58575

Predicted

two hybrid

FSW = 0.0256

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G32510

Predicted

two hybrid

FSW = 0.0152

Unknown

ANION EXCHANGER
AT2G35940

Predicted

two hybrid

FSW = 0.0134

Unknown

BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR
AT3G20860

Predicted

interaction prediction

FSW = 0.0345

Unknown

ATNEK5 (NIMA-RELATED KINASE5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G48630

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0977

Unknown

RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) NUCLEOTIDE BINDING
AT2G26060

Predicted

Phylogenetic profile method

FSW = 0.0389

Unknown

EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING
AT4G02730

Predicted

Phylogenetic profile method

FSW = 0.0934

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G49660

Predicted

Phylogenetic profile method

FSW = 0.0586

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G35330

Predicted

Gene fusion method

FSW = 0.0635

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G43380

Predicted

Gene fusion method

FSW = 0.0141

Unknown

TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G27790

Predicted

Gene fusion method

FSW = 0.0508

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G47220

Predicted

Gene fusion method

FSW = 0.0508

Unknown

CYCA33 (CYCLIN A33) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G05155

Predicted

Gene fusion method

FSW = 0.0635

Unknown

SUGAR TRANSPORTER PUTATIVE
AT1G60360

Predicted

Gene fusion method

FSW = 0.0635

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454