Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18080 - ( ATARCA nucleotide binding )
60 Proteins interacs with AT1G18080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G52140 | PredictedAffinity Capture-MS | FSW = 0.0329
| Class C:plastidplasma membrane | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT2G47250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0214
| Class C:plastid | RNA HELICASE PUTATIVE |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0050
| Class C:plastid | DNA HELICASE-RELATED |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0113
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G39460 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0352
| Class C:plasma membrane | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G79930 | Predictedinteraction prediction | FSW = 0.0506
| Class C:plasma membrane | HSP91 ATP BINDING |
AT5G25780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0154
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT2G06510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0151
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G04290 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | THIOESTERASE FAMILY PROTEIN |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G18130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4517
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT3G56990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0488
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT1G21690 | PredictedGene fusion method | FSW = 0.0176
| Unknown | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G03190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0097
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G56110 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0530
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT1G04510 | PredictedCo-purificationCo-expression | FSW = 0.0026
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G62310 | Predictedinteraction prediction | FSW = 0.0334
| Unknown | RNA HELICASE PUTATIVE |
AT3G12860 | Predictedinteraction prediction | FSW = 0.0655
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT1G63810 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0468
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT1G69220 | Predictedtwo hybrid | FSW = 0.0060
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G34065 | PredictedGene fusion method | FSW = 0.0205
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT1G16470 | Predictedtwo hybrid | FSW = 0.0297
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G77670 | Predictedtwo hybridtwo hybrid | FSW = 0.0194
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
AT1G79210 | Predictedtwo hybrid | FSW = 0.0247
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G36300 | Predictedtwo hybridtwo hybrid | FSW = 0.0049
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT5G08415 | PredictedAffinity Capture-MS | FSW = 0.0331
| Unknown | LIPOIC ACID SYNTHASE FAMILY PROTEIN |
AT5G41190 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0309
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT3G24080 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0723
| Unknown | KRR1 FAMILY PROTEIN |
AT5G60040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0156
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
AT5G13780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0483
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G11900 | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT5G08420 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0640
| Unknown | RNA BINDING |
AT3G60240 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0090
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT3G11450 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0670
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT1G80410 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0456
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G54510 | PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G31660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0666
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0467
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.0227
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0095
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G10930 | Predictedsynthetic growth defect | FSW = 0.0251
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G04730 | Predictedsynthetic growth defectCo-expression | FSW = 0.0361
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G59410 | PredictedSynthetic Rescue | FSW = 0.0106
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G27560 | Predictedtwo hybrid | FSW = 0.0155
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT3G07790 | Predictedtwo hybrid | FSW = 0.0181
| Unknown | DGCR14-RELATED |
AT1G24706 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | UNKNOWN PROTEIN |
AT5G58575 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT4G32510 | Predictedtwo hybrid | FSW = 0.0152
| Unknown | ANION EXCHANGER |
AT2G35940 | Predictedtwo hybrid | FSW = 0.0134
| Unknown | BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR |
AT3G20860 | Predictedinteraction prediction | FSW = 0.0345
| Unknown | ATNEK5 (NIMA-RELATED KINASE5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G48630 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0977
| Unknown | RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) NUCLEOTIDE BINDING |
AT2G26060 | PredictedPhylogenetic profile method | FSW = 0.0389
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
AT4G02730 | PredictedPhylogenetic profile method | FSW = 0.0934
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G49660 | PredictedPhylogenetic profile method | FSW = 0.0586
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G35330 | PredictedGene fusion method | FSW = 0.0635
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G43380 | PredictedGene fusion method | FSW = 0.0141
| Unknown | TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G27790 | PredictedGene fusion method | FSW = 0.0508
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G47220 | PredictedGene fusion method | FSW = 0.0508
| Unknown | CYCA33 (CYCLIN A33) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G05155 | PredictedGene fusion method | FSW = 0.0635
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G60360 | PredictedGene fusion method | FSW = 0.0635
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454