Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39460 - ( RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA binding / nucleotide binding / structural constituent of ribosome )
23 Proteins interacs with AT2G39460Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G18080![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.0352
| Class C:plasma membrane | ATARCA NUCLEOTIDE BINDING |
AT4G16830![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0293
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT3G23620![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.1608
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16810![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.1758
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT3G07050![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.2127
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
AT1G06380![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1845
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT1G03530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT5G02530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.0407
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G08420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | RNA BINDING |
AT4G11820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
AT3G16840![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0591
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G11450![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0571
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT2G36930![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1129
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G21440![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1364
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G71280![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G52930![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.1818
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G18830 | PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G13160![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.1693
| Unknown | SDA1 FAMILY PROTEIN |
AT5G19820![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0225
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT4G27640![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0442
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G14520![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementCo-expression | FSW = 0.1416
| Unknown | PESCADILLO-RELATED |
AT4G38630![]() ![]() ![]() ![]() | Predictedtwo hybridCo-expression | FSW = 0.0065
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT3G55280![]() ![]() ![]() ![]() | PredictedGene fusion methodCo-expression | FSW = 0.2136
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454