Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07050 - ( GTP-binding family protein )
53 Proteins interacs with AT3G07050| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G25520
   | PredictedAffinity Capture-MSCo-expression | FSW = 0.2909
| Class C:nucleus | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G47610
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1354
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G43170
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2432
| Class C:nucleus | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G39460
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2127
| Class C:nucleus | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G57015
| Predictedinteraction prediction | FSW = 0.0111
| Class C:nucleus | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G03930
| PredictedAffinity Capture-MS | FSW = 0.0149
| Class C:nucleus | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT2G44860
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3558
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3399
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5724
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2405
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4821
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G16810
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4291
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT5G55920
| Predictedinteraction predictionCo-expression | FSW = 0.3600
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G58660
| Predictedinteraction predictionCo-expression | FSW = 0.3161
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
| AT3G18600
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2626
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G55620
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.3933
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT5G15550
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3935
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G36130
| Predictedinteraction prediction | FSW = 0.0263
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
| AT1G29900
| PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4892
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT1G67120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.2306
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
| AT1G11680
| PredictedSynthetic Lethality | FSW = 0.0202
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
| AT2G40360
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4036
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G17465
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0218
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G43460
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0585
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
| AT1G50920
| Predictedinteraction predictionCo-expression | FSW = 0.3865
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT1G77050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3344
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT5G22110
| PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
| AT2G18220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.4121
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT1G79150
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3938
| Unknown | BINDING |
| AT5G14520
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4517
| Unknown | PESCADILLO-RELATED |
| AT1G13160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4276
| Unknown | SDA1 FAMILY PROTEIN |
| AT4G25730
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1818
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
| AT5G52820
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2261
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
| AT2G40430
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1745
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
| AT1G52980
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2867
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT4G30870
| PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
| AT2G36930
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2896
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.1153
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT1G42440
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0273
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT5G64670
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0282
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
| AT5G06360
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4228
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT4G15770
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3608
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT1G36240
| PredictedAffinity Capture-MS | FSW = 0.0898
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
| AT4G01560
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4333
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT2G21440
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3798
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.1915
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G52930
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4761
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G25260
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2880
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT1G01960
| PredictedSynthetic LethalityCo-expression | FSW = 0.0324
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT5G65900
| Predictedinteraction predictionCo-expression | FSW = 0.2196
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.0781
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT5G39770
| Predictedinteraction prediction | FSW = 0.0547
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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