AT1G42440 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN ribosome biogenesis LOCATED IN nucleus EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s AARP2CN (InterProIPR012948) Protein of unknown function DUF663 (InterProIPR007034) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G067201) Has 2447 Blast hits to 1812 proteins in 205 species Archae - 0 Bacteria - 115 Metazoa - 903 Fungi - 423 Plants - 100 Viruses - 53 Other Eukaryotes - 853 (source NCBI BLink) )

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.1164	Unknown	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.1193	Unknown	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G17360	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1596	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G15200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2499	Unknown	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.1008	Unknown	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.1815	Unknown	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G60770	Predicted Affinity Capture-MS	FSW = 0.1364	Unknown	40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT3G48000	Predicted two hybrid	FSW = 0.0316	Unknown	ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ATP BINDING / ALDEHYDE DEHYDROGENASE (NAD)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2172	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G03920	Predicted Affinity Capture-MS Co-expression	FSW = 0.0878	Unknown	GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.1838	Unknown	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT2G04390	Predicted Affinity Capture-MS	FSW = 0.1391	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT4G00100	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2506	Unknown	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.0711	Unknown	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT1G73180	Predicted Affinity Capture-MS	FSW = 0.1584	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT2G25070	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0504	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT3G53430	Predicted Affinity Capture-MS	FSW = 0.0635	Unknown	60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT2G42520	Predicted Affinity Capture-MS	FSW = 0.0821	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT5G57015	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1136	Unknown	CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1164	Unknown	ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT4G16830	Predicted Affinity Capture-MS	FSW = 0.0204	Unknown	NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT1G63810	Predicted Affinity Capture-MS Co-expression	FSW = 0.2341	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT4G25630	Predicted Affinity Capture-MS Co-expression	FSW = 0.1495	Unknown	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0339	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G07050	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0273	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G19385	Predicted Affinity Capture-MS	FSW = 0.0094	Unknown	ZINC ION BINDING
AT4G14300	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0437	Unknown	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.0068	Unknown	HISTONE H2B PUTATIVE
AT4G08350	Predicted Affinity Capture-MS	FSW = 0.0309	Unknown	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210	Predicted Affinity Capture-MS	FSW = 0.0303	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT1G23800	Predicted two hybrid two hybrid	FSW = 0.0273	Unknown	ALDH2B7 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT2G47990	Predicted Affinity Capture-MS Co-expression	FSW = 0.1138	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.2664	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT3G56340	Predicted Affinity Capture-MS	FSW = 0.0414	Unknown	40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.1976	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT2G02570	Predicted Affinity Capture-MS	FSW = 0.0129	Unknown	NUCLEIC ACID BINDING
AT5G54940	Predicted Affinity Capture-MS	FSW = 0.0040	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3127	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G69070	Predicted Affinity Capture-MS Co-expression	FSW = 0.1753	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G72320	Predicted Affinity Capture-MS	FSW = 0.0805	Unknown	APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT2G47420	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3255	Unknown	DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G51270	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS co-fractionation Co-fractionation interaction prediction	FSW = 0.4154	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G56510	Predicted Affinity Capture-MS	FSW = 0.0214	Unknown	TBP-BINDING PROTEIN PUTATIVE
AT5G41190	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1291	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT2G32850	Predicted Affinity Capture-MS	FSW = 0.0100	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT2G34357	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2388	Unknown	BINDING
AT2G40430	Predicted Affinity Capture-MS Co-expression	FSW = 0.0681	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT3G13230	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1825	Unknown	RNA BINDING
AT3G20790	Predicted Affinity Capture-MS	FSW = 0.0172	Unknown	OXIDOREDUCTASE FAMILY PROTEIN
AT3G24080	Predicted Affinity Capture-MS	FSW = 0.1976	Unknown	KRR1 FAMILY PROTEIN
AT3G60240	Predicted Affinity Capture-MS	FSW = 0.0614	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT5G09620	Predicted Affinity Capture-MS	FSW = 0.0183	Unknown	OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN
AT5G27990	Predicted Affinity Capture-MS	FSW = 0.1888	Unknown	UNKNOWN PROTEIN
AT5G46840	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0269	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G02530	Predicted Affinity Capture-MS Co-expression	FSW = 0.0257	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G13224	Predicted Affinity Capture-MS	FSW = 0.0261	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN