Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37190 - ( 60S ribosomal protein L12 (RPL12A) )

59 Proteins interacs with AT2G37190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.5317

Class C:

plasma membrane

nucleus

 EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.2689

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.5378

Class C:

plasma membrane

nucleus

 RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.3073

Class C:

plasma membrane

nucleus

 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.3516

Class C:

plasma membrane

nucleus

 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.5614

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.3244

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.5081

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.2577

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.4151

Class C:

plasma membrane

nucleus

 ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27710

Predicted

Affinity Capture-MS

FSW = 0.4642

Class C:

plasma membrane

nucleus

 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.4565

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.3967

Class C:

plasma membrane

 ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.4603

Class C:

plasma membrane

 RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.3306

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.0115

Class C:

plasma membrane

 PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.5298

Class C:

plasma membrane

 40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.5396

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G60790

Predicted

Affinity Capture-MS

FSW = 0.1116

Class C:

plasma membrane

 ATGCN1 TRANSPORTER
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.5438

Class C:

plasma membrane

 STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810Predicted

Affinity Capture-MS

FSW = 0.2778

Class C:

plasma membrane

 EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT3G53430

Predicted

synthetic growth defect

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.4000

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.3321

Class C:

plasma membrane

 40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.4060

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT5G60670

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0357

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L12 (RPL12C)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.3451

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610

Predicted

Affinity Capture-MS

FSW = 0.5162

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.5120

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G67270

Predicted

Affinity Capture-MS

FSW = 0.0086

Class C:

nucleus

 ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.2176

Class C:

nucleus

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G41840

Predicted

Affinity Capture-MS

FSW = 0.2154

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.4255

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.4093

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1817

Class C:

nucleus

 FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G72440

Predicted

Affinity Capture-MS

FSW = 0.2493

Class C:

nucleus

 EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT1G33140

Predicted

Affinity Capture-MS

FSW = 0.4085

Unknown

 PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G66580

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.5424

Unknown

 60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G14320

Predicted

Affinity Capture-Western

FSW = 0.0757

Unknown

 SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.4009

Unknown

 60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380

Predicted

Affinity Capture-MS

FSW = 0.0816

Unknown

 RIBOSOMAL PROTEIN-RELATED
AT2G47250

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0597

Unknown

 RNA HELICASE PUTATIVE
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.4436

Unknown

 RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.4200

Unknown

 60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G09330

Predicted

two hybrid

FSW = 0.0215

Unknown

 UNKNOWN PROTEIN
AT4G17620

Predicted

Affinity Capture-MS

FSW = 0.3035

Unknown

 GLYCINE-RICH PROTEIN
AT1G57660Predicted

Affinity Capture-MS

FSW = 0.3863

Unknown

 60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT2G03820

Predicted

Affinity Capture-Western

FSW = 0.1455

Unknown

 NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.4956

Unknown

 60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390

Predicted

Affinity Capture-MS

FSW = 0.4591

Unknown

 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.4328

Unknown

 60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.4129

Unknown

 RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G42440

Predicted

Affinity Capture-MS

FSW = 0.0711

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT3G13640

Predicted

Affinity Capture-MS

FSW = 0.1107

Unknown

 ATRLI1 TRANSPORTER
AT3G11450

Predicted

Affinity Capture-MS

FSW = 0.1242

Unknown

 DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT2G16950

Predicted

Affinity Capture-MS

FSW = 0.0555

Unknown

 TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT1G21160

Predicted

Affinity Capture-MS

FSW = 0.1585

Unknown

 GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT1G13160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1875

Unknown

 SDA1 FAMILY PROTEIN
AT1G08410

Predicted

Affinity Capture-MS

FSW = 0.0836

Unknown

 GTP-BINDING FAMILY PROTEIN
AT1G04170

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0893

Unknown

 EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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