Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G70600 - ( structural constituent of ribosome )
73 Proteins interacs with AT1G70600| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G04920
   | PredictedAffinity Capture-MS | FSW = 0.6720
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT3G49910
| PredictedAffinity Capture-MS | FSW = 0.5038
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.5157
| Class C:plasma membrane | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G31700
| PredictedAffinity Capture-MS | FSW = 0.4654
| Class C:plasma membrane | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MS | FSW = 0.3982
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.6702
| Class C:plasma membrane | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09200
| PredictedAffinity Capture-MS | FSW = 0.3345
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.1858
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.4649
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.7119
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.4632
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.4308
| Class C:plasma membrane | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G34480
| PredictedAffinity Capture-MS | FSW = 0.4142
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.3544
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT1G48830
| PredictedAffinity Capture-MS | FSW = 0.5429
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.6350
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT2G27710
| PredictedAffinity Capture-MS | FSW = 0.5614
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.6300
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT2G37190
| PredictedAffinity Capture-MS | FSW = 0.5438
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.4970
| Class C:plasma membrane | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G34670
| PredictedAffinity Capture-MS | FSW = 0.5995
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
| AT4G02230
| PredictedAffinity Capture-MS | FSW = 0.5906
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
| AT5G62300
| PredictedAffinity Capture-MS | FSW = 0.0855
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.6295
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT5G46430
| PredictedAffinity Capture-MS | FSW = 0.5891
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
| AT5G60790
| PredictedAffinity Capture-MS | FSW = 0.0703
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.5898
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.4290
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.4682
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT5G15200
| PredictedAffinity Capture-MS | FSW = 0.3959
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT1G33140
| PredictedAffinity Capture-MS | FSW = 0.4955
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.5842
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT5G22440
| PredictedAffinity Capture-MS | FSW = 0.5680
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.5072
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2891
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G23620
| PredictedAffinity Capture-MS | FSW = 0.1652
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.5871
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.4050
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
| AT5G15520
| PredictedAffinity Capture-MS | FSW = 0.2045
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19B) |
| AT3G06700
| PredictedAffinity Capture-MS | FSW = 0.4856
| Unknown | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.4905
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT1G72440
| PredictedAffinity Capture-MS | FSW = 0.2541
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G58660
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2406
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
| AT1G23290
| PredictedGene fusion methodPhylogenetic profile method | FSW = 0.2970
| Unknown | RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G53020
| PredictedAffinity Capture-MS | FSW = 0.4812
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G41840
| PredictedAffinity Capture-MS | FSW = 0.2473
| Unknown | 40S RIBOSOMAL PROTEIN S2 (RPS2C) |
| AT5G58420
| PredictedAffinity Capture-MS | FSW = 0.5056
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
| AT1G19120
| PredictedAffinity Capture-RNA | FSW = 0.0279
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT5G48870
| PredictedAffinity Capture-RNA | FSW = 0.0425
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT1G50920
| PredictedAffinity Capture-MS | FSW = 0.2137
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT5G02960
| PredictedAffinity Capture-MS | FSW = 0.2576
| Unknown | 40S RIBOSOMAL PROTEIN S23 (RPS23B) |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.3575
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0683
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT3G22660
| PredictedAffinity Capture-MS | FSW = 0.1363
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT5G09500
| PredictedAffinity Capture-MS | FSW = 0.5709
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.5654
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.6035
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT1G20080
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0791
| Unknown | SYTB |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.2197
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G22240
| PredictedAffinity Capture-MS | FSW = 0.2615
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
| AT1G52980
| PredictedAffinity Capture-MS | FSW = 0.1724
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.5089
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
| AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1805
| Unknown | BINDING |
| AT2G36930
| PredictedAffinity Capture-MS | FSW = 0.1087
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT2G39770
| PredictedAffinity Capture-MS | FSW = 0.0558
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.5384
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT5G08420
| PredictedAffinity Capture-MS | FSW = 0.1615
| Unknown | RNA BINDING |
| AT5G20600
| PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
| AT2G13680
| PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
| AT3G23390
| PredictedAffinity Capture-MS | FSW = 0.6139
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.4464
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.6264
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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