Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46430 - ( 60S ribosomal protein L32 (RPL32B) )
43 Proteins interacs with AT5G46430| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G48100
   | Experimentaltwo hybrid | FSW = 0.0284
| Unknown | ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT3G04920
| PredictedAffinity Capture-MS | FSW = 0.5284
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT3G49910
| PredictedAffinity Capture-MS | FSW = 0.3923
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT3G09630
| PredictedAffinity Capture-MS | FSW = 0.2134
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.4463
| Class C:plasma membrane | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.5287
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.3097
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.3170
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G48830
| PredictedAffinity Capture-MS | FSW = 0.5358
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.4746
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT4G18100
| PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1466
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L32 (RPL32A) |
| AT2G27710
| PredictedAffinity Capture-MS | FSW = 0.4492
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.3300
| Class C:plasma membrane | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G34670
| PredictedAffinity Capture-MS | FSW = 0.3911
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.4808
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.5891
| Class C:plasma membrane | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G02230
| PredictedAffinity Capture-MS | FSW = 0.5988
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.4178
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT1G33140
| PredictedAffinity Capture-MS | FSW = 0.3552
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.3741
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT3G06700
| PredictedAffinity Capture-MS | FSW = 0.6644
| Unknown | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
| AT3G58660
| PredictedAffinity Capture-MS | FSW = 0.1263
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.3889
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.4589
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
| AT3G53020
| PredictedAffinity Capture-MS | FSW = 0.5026
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G09500
| PredictedAffinity Capture-MS | FSW = 0.6312
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
| AT5G02960
| PredictedAffinity Capture-MS | FSW = 0.3956
| Unknown | 40S RIBOSOMAL PROTEIN S23 (RPS23B) |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.3529
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.4678
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0510
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT1G61670
| Predictedtwo hybridtwo hybrid | FSW = 0.0063
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
| AT1G22240
| PredictedAffinity Capture-MS | FSW = 0.3571
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
| AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.5807
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.4230
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT3G23390
| PredictedAffinity Capture-MS | FSW = 0.6401
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.4135
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G60245
| PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AC) |
| AT4G02860
| PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | CATALYTIC |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.1557
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT2G27200
| PredictedAffinity Capture-MS | FSW = 0.0537
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT5G20600
| PredictedAffinity Capture-MS | FSW = 0.1157
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
| AT5G61770
| PredictedAffinity Capture-MS | FSW = 0.0447
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT1G15420
| Predictedinteraction prediction | FSW = 0.0255
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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