Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G67430 - ( 60S ribosomal protein L17 (RPL17B) )

73 Proteins interacs with AT1G67430
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.5757

Class C:

vacuole

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.4756

Class C:

vacuole

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.5504

Class C:

vacuole

plasma membrane

nucleus

 EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.3434

Class C:

vacuole

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.6553

Class C:

vacuole

plasma membrane

nucleus

 RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.3345

Class C:

vacuole

plasma membrane

nucleus

 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.4425

Class C:

vacuole

plasma membrane

nucleus

 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27400

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2528

Class C:

vacuole

plasma membrane

 60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT2G36160

Predicted

Affinity Capture-MS

FSW = 0.1099

Class C:

vacuole

plasma membrane

 40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.4632

Class C:

vacuole

plasma membrane

 ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.4564

Class C:

vacuole

plasma membrane

 RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.3568

Class C:

vacuole

plasma membrane

 60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT2G47610

Predicted

Affinity Capture-MS

FSW = 0.4396

Class C:

vacuole

nucleus

 60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.3959

Class C:

vacuole

nucleus

 40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G33140

Predicted

Affinity Capture-MS

FSW = 0.5112

Class C:

vacuole

 PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G21580

Predicted

Affinity Capture-MS

FSW = 0.1561

Class C:

vacuole

 40S RIBOSOMAL PROTEIN S25 (RPS25B)
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.6300

Class C:

vacuole

 60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G34030Predicted

Affinity Capture-MS

FSW = 0.2745

Class C:

vacuole

 40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.3303

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G27710

Predicted

Affinity Capture-MS

FSW = 0.5086

Class C:

plasma membrane

nucleus

 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.6603

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT2G04390

Predicted

Affinity Capture-MS

FSW = 0.0557

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.5224

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT2G37190

Predicted

Affinity Capture-MS

FSW = 0.5614

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.4836

Class C:

plasma membrane

nucleus

 ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.5067

Class C:

plasma membrane

 40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.5889

Class C:

plasma membrane

 40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.6295

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.5287

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT5G60790

Predicted

Affinity Capture-MS

FSW = 0.0703

Class C:

plasma membrane

 ATGCN1 TRANSPORTER
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.7119

Class C:

plasma membrane

 STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230

Predicted

Affinity Capture-MS

FSW = 0.5014

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.0855

Class C:

plasma membrane

 40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G74270

Predicted

Affinity Capture-MS

FSW = 0.2917

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.5071

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.4290

Class C:

plasma membrane

 40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.5532

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.2406

Class C:

nucleus

 60S RIBOSOMAL PROTEIN-RELATED
AT4G25630

Predicted

Synthetic Lethality

FSW = 0.1656

Class C:

nucleus

 FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.4773

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.5574

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390Predicted

Affinity Capture-MS

FSW = 0.3735

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G15520

Predicted

Affinity Capture-MS

FSW = 0.1582

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S19 (RPS19B)
AT5G48240

Predicted

Affinity Capture-MS

FSW = 0.1810

Class C:

nucleus

 UNKNOWN PROTEIN
AT2G41840

Predicted

Affinity Capture-MS

FSW = 0.2247

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT3G53020

Predicted

Affinity Capture-MS

FSW = 0.4354

Class C:

nucleus

 STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.5056

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.4420

Unknown

 60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT5G63110

Predicted

Affinity Capture-MS

FSW = 0.0043

Unknown

 HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G17620

Predicted

Affinity Capture-MS

FSW = 0.2766

Unknown

 GLYCINE-RICH PROTEIN
AT5G09500

Predicted

Affinity Capture-MS

FSW = 0.4875

Unknown

 40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G10490

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2927

Unknown

 UNKNOWN PROTEIN
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.2414

Unknown

 GTP-BINDING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.5539

Unknown

 RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.5244

Unknown

 60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.1281

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1673

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G52980

Predicted

Affinity Capture-MS

FSW = 0.1556

Unknown

 GTP-BINDING FAMILY PROTEIN
AT1G57660Predicted

Affinity Capture-MS

FSW = 0.4496

Unknown

 60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT2G03820

Predicted

Affinity Capture-MS

FSW = 0.1218

Unknown

 NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT2G27200

Predicted

Affinity Capture-MS

FSW = 0.1689

Unknown

 GTP-BINDING FAMILY PROTEIN
AT2G34357Predicted

Affinity Capture-MS

FSW = 0.1805

Unknown

 BINDING
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.5680

Unknown

 60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390

Predicted

Affinity Capture-MS

FSW = 0.5944

Unknown

 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.5137

Unknown

 60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT4G11820

Predicted

Affinity Capture-MS

FSW = 0.1323

Unknown

 MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE
AT4G15770

Predicted

Synthetic Lethality

FSW = 0.0968

Unknown

 RNA BINDING / PROTEIN BINDING
AT5G14520

Predicted

Affinity Capture-MS

FSW = 0.1759

Unknown

 PESCADILLO-RELATED
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.1466

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G61770

Predicted

Affinity Capture-MS

FSW = 0.0958

Unknown

 PPAN (PETER PAN-LIKE PROTEIN)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.5518

Unknown

 RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.0495

Unknown

 60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G07840

Predicted

Gene fusion method

FSW = 0.0301

Unknown

 ANKYRIN REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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