Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15520 - ( 40S ribosomal protein S19 (RPS19B) )
24 Proteins interacs with AT5G15520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.1469
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0948
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.1582
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G05560 | Predictedinterologs mappingSynthetic LethalityPhenotypic Enhancement | FSW = 0.0286
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.1730
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.1545
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.1178
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0030
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G33340 | PredictedCo-purification | FSW = 0.0366
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.2045
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.1469
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | ATGCN1 TRANSPORTER |
AT5G61170 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2381
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19C) |
AT3G02080 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3683
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19A) |
AT1G55350 | Predictedtwo hybrid | FSW = 0.1169
| Unknown | DEK1 (DEFECTIVE KERNEL 1) CALCIUM-DEPENDENT CYSTEINE-TYPE ENDOPEPTIDASE/ CYSTEINE-TYPE ENDOPEPTIDASE |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.1036
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.1075
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0106
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0201
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT3G23390 | PredictedAffinity Capture-MS | FSW = 0.2359
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0123
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G31600 | Predictedtwo hybrid | FSW = 0.0988
| Unknown | UDP-GLUCURONIC ACID/UDP-N-ACETYLGALACTOSAMINE TRANSPORTER-RELATED |
AT1G69340 | Predictedtwo hybrid | FSW = 0.2143
| Unknown | APPR-1-P PROCESSING ENZYME FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454