Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G23390 - ( 60S ribosomal protein L36a/L44 (RPL36aA) )
45 Proteins interacs with AT3G23390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.5558
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.4689
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.2596
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.5115
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.3883
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.4818
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.5944
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.3552
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.3633
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.3312
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.4580
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.3935
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT1G48830 | PredictedAffinity Capture-MS | FSW = 0.5900
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.5595
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.5161
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT2G27710 | PredictedAffinity Capture-MS | FSW = 0.5263
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.5161
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.4591
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.3861
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.5036
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G46430 | PredictedAffinity Capture-MS | FSW = 0.6401
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.6139
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02230 | PredictedAffinity Capture-MS | FSW = 0.6059
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.4924
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.4290
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.4862
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT5G15520 | PredictedAffinity Capture-MS | FSW = 0.2359
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19B) |
AT3G53020 | PredictedAffinity Capture-MS | FSW = 0.4876
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G09500 | PredictedAffinity Capture-MS | FSW = 0.4792
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.3998
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.5352
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT2G47350 | Predictedtwo hybridtwo hybrid | FSW = 0.0980
| Unknown | PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT5G48655 | Predictedtwo hybrid | FSW = 0.0408
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.3463
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.5650
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.4673
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT4G02860 | PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | CATALYTIC |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.3726
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G46960 | PredictedPhenotypic Suppression | FSW = 0.0629
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.4494
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0738
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G38890 | PredictedPhenotypic Suppression | FSW = 0.0174
| Unknown | EXORIBONUCLEASE-RELATED |
AT3G07200 | Predictedtwo hybridCo-expression | FSW = 0.0459
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT4G14320 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0193
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454