Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G49010 - ( ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) structural constituent of ribosome )

141 Proteins interacs with AT3G49010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.4111

Class C:

vacuole

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.3819

Class C:

vacuole

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.4650

Class C:

vacuole

plasma membrane

nucleus

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.3098

Class C:

vacuole

plasma membrane

nucleus

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.3173

Class C:

vacuole

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.4584

Class C:

vacuole

plasma membrane

nucleus

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.2335

Class C:

vacuole

plasma membrane

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.4425

Class C:

vacuole

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G01280

Predicted

Affinity Capture-MS

FSW = 0.0075

Class C:

vacuole

plasma membrane

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT2G36160

Predicted

Affinity Capture-MS

FSW = 0.1104

Class C:

vacuole

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.1844

Class C:

vacuole

plasma membrane

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT4G38510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0904

Class C:

vacuole

plasma membrane

VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE
AT3G12580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0533

Class C:

vacuole

plasma membrane

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.3182

Class C:

vacuole

plasma membrane

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.3287

Class C:

vacuole

plasma membrane

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.2684

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT5G27850

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1944

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT5G19320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0688

Class C:

vacuole

nucleus

RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT2G47610

Predicted

Affinity Capture-MS

FSW = 0.3770

Class C:

vacuole

nucleus

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G63400

Predicted

biochemical

FSW = 0.0055

Class C:

vacuole

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT1G33140

Predicted

Affinity Capture-MS

FSW = 0.3223

Class C:

vacuole

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G34030Predicted

Affinity Capture-MS

FSW = 0.1845

Class C:

vacuole

40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.4728

Class C:

vacuole

60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT3G22110

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0399

Class C:

vacuole

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0266

Class C:

vacuole

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.2310

Class C:

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.1122

Class C:

plasma membrane

nucleus

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G01610

Predicted

Affinity Capture-MS

FSW = 0.0824

Class C:

plasma membrane

nucleus

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G27710

Predicted

Affinity Capture-MS

FSW = 0.3516

Class C:

plasma membrane

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.4508

Class C:

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT2G37190

Predicted

Affinity Capture-MS

FSW = 0.3516

Class C:

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.3001

Class C:

plasma membrane

nucleus

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.3522

Class C:

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT1G18540

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0708

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT5G09650

Predicted

Affinity Capture-MS

FSW = 0.0306

Class C:

plasma membrane

ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.3378

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.3880

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0203

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G63290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0487

Class C:

plasma membrane

RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT5G23900

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0310

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.4649

Class C:

plasma membrane

STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1710

Class C:

plasma membrane

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G02230

Predicted

Affinity Capture-MS

FSW = 0.3465

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT5G12150

Predicted

two hybrid

FSW = 0.0157

Class C:

plasma membrane

PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN / RHOGAP DOMAIN-CONTAINING PROTEIN
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.4933

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.3097

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G41880

Predicted

Affinity Capture-MS

FSW = 0.1454

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT1G74270

Predicted

Affinity Capture-MS

FSW = 0.2135

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.3742

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53430

Predicted

Affinity Capture-MS

FSW = 0.1409

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.2930

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.3964

Class C:

nucleus

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0463

Class C:

nucleus

HISTONE H4
AT1G77840

Predicted

Affinity Capture-MS

FSW = 0.1296

Class C:

nucleus

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2269

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G57150

Predicted

Affinity Capture-MS

FSW = 0.1083

Class C:

nucleus

NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.4632

Class C:

nucleus

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390Predicted

Affinity Capture-MS

FSW = 0.2284

Class C:

nucleus

40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G14170

Predicted

two hybrid

two hybrid

FSW = 0.0102

Class C:

nucleus

CHC1
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.4007

Class C:

nucleus

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700

Predicted

Affinity Capture-MS

FSW = 0.2409

Class C:

nucleus

60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.1542

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G72440

Predicted

Affinity Capture-MS

FSW = 0.2841

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G54910

Predicted

Affinity Capture-MS

FSW = 0.1219

Class C:

nucleus

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55920

Predicted

Affinity Capture-MS

FSW = 0.1725

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.2163

Class C:

nucleus

60S RIBOSOMAL PROTEIN-RELATED
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0293

Class C:

nucleus

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G54350

Predicted

two hybrid

FSW = 0.0278

Class C:

nucleus

EMB1967 (EMBRYO DEFECTIVE 1967)
AT1G65440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0565

Class C:

nucleus

GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT1G72560

Predicted

synthetic growth defect

FSW = 0.0091

Class C:

nucleus

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT3G55620

Predicted

Affinity Capture-MS

FSW = 0.1387

Class C:

nucleus

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G76860

Predicted

two hybrid

FSW = 0.0029

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.3618

Class C:

nucleus

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT3G53020

Predicted

Affinity Capture-MS

FSW = 0.2581

Class C:

nucleus

STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G15550

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0964

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G04940

Predicted

Synthetic Rescue

FSW = 0.0405

Unknown

SCRAMBLASE-RELATED
AT4G26970

Predicted

Affinity Capture-MS

FSW = 0.0212

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G21640

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.4787

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G19660

Predicted

Affinity Capture-MS

FSW = 0.0343

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT5G15450

Predicted

Synthetic Rescue

FSW = 0.0199

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G23430

Predicted

Synthetic Lethality

FSW = 0.0188

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G07180

Predicted

Affinity Capture-MS

FSW = 0.0017

Unknown

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT5G26130

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXTRACELLULAR REGION EXPRESSED IN ROOT LEAF EXPRESSED DURING LP04 FOUR LEAVES VISIBLE CONTAINS INTERPRO DOMAIN/S ALLERGEN V5/TPX-1 RELATED CONSERVED SITE (INTERPROIPR018244) ALLERGEN V5/TPX-1 RELATED (INTERPROIPR001283) SCP-LIKE EXTRACELLULAR (INTERPROIPR014044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PATHOGENESIS-RELATED PROTEIN PUTATIVE (TAIRAT4G337101) HAS 2282 BLAST HITS TO 2195 PROTEINS IN 288 SPECIES ARCHAE - 0 BACTERIA - 49 METAZOA - 1341 FUNGI - 231 PLANTS - 611 VIRUSES - 0 OTHER EUKARYOTES - 50 (SOURCE NCBI BLINK)
AT3G08730

Predicted

Phenotypic Suppression

FSW = 0.0192

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.1995

Unknown

GTP-BINDING PROTEIN-RELATED
AT4G17620

Predicted

Affinity Capture-MS

FSW = 0.2186

Unknown

GLYCINE-RICH PROTEIN
AT3G22660

Predicted

Affinity Capture-MS

FSW = 0.1080

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.4532

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.3864

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.1844

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT2G05170

Predicted

Phenotypic Suppression

FSW = 0.0095

Unknown

ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT5G61330

Predicted

two hybrid

two hybrid

FSW = 0.0258

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G25800

Predicted

two hybrid

two hybrid

FSW = 0.0118

Unknown

EXONUCLEASE FAMILY PROTEIN
AT1G22240

Predicted

Affinity Capture-MS

FSW = 0.1300

Unknown

APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G68200

Predicted

Affinity Capture-MS

FSW = 0.0151

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT3G08650

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1363

Unknown

METAL TRANSPORTER FAMILY PROTEIN
AT3G15460

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1677

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.4387

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390

Predicted

Affinity Capture-MS

FSW = 0.3552

Unknown

60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.3984

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT1G01930

Predicted

Affinity Capture-MS

FSW = 0.0069

Unknown

ZINC FINGER PROTEIN-RELATED
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.1569

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G05830

Predicted

Synthetic Rescue

FSW = 0.0289

Unknown

ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G13580

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.1121

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G17760

Predicted

Affinity Capture-MS

FSW = 0.0299

Unknown

CSTF77 PROTEIN BINDING
AT1G18830Predicted

Affinity Capture-MS

FSW = 0.0416

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G21370

Predicted

Synthetic Rescue

FSW = 0.0138

Unknown

UNKNOWN PROTEIN
AT1G26270

Predicted

Affinity Capture-Western

FSW = 0.0207

Unknown

PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT1G33110

Predicted

Phenotypic Suppression

FSW = 0.0073

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G57660Predicted

Affinity Capture-MS

FSW = 0.2980

Unknown

60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT1G78290

Predicted

Phenotypic Suppression

FSW = 0.0142

Unknown

SERINE/THREONINE PROTEIN KINASE PUTATIVE
AT2G27170

Predicted

Affinity Capture-MS

FSW = 0.0235

Unknown

TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT2G36930

Predicted

Affinity Capture-MS

FSW = 0.0689

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.0419

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G41530

Predicted

Phenotypic Suppression

FSW = 0.0390

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G51880

Predicted

Synthetic Lethality

FSW = 0.0234

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G57140

Predicted

biochemical

FSW = 0.0055

Unknown

PATATIN-RELATED
AT4G11820

Predicted

Affinity Capture-MS

FSW = 0.0613

Unknown

MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE
AT4G19210

Predicted

Affinity Capture-MS

FSW = 0.1661

Unknown

ATRLI2 TRANSPORTER
AT4G32850

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0597

Unknown

NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT5G09630

Predicted

Phenotypic Suppression

FSW = 0.0111

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G16040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0266

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G19360

Predicted

Affinity Capture-MS

FSW = 0.0142

Unknown

CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G19820

Predicted

Phenotypic Suppression

FSW = 0.0258

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G24410

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G24670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0025

Unknown

CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G26250

Predicted

Synthetic Lethality

Dosage Growth Defect

FSW = 0.0056

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G40530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.0731

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK)
AT5G46190

Predicted

Affinity Capture-MS

FSW = 0.0586

Unknown

KH DOMAIN-CONTAINING PROTEIN
AT5G49970

Predicted

Synthetic Rescue

FSW = 0.0221

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G60870

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0586

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.4628

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G16265

Predicted

Synthetic Lethality

FSW = 0.0286

Unknown

NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G11500

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0073

Unknown

UNKNOWN PROTEIN
AT5G14520

Predicted

Affinity Capture-MS

FSW = 0.1513

Unknown

PESCADILLO-RELATED
AT5G46840

Predicted

Affinity Capture-MS

FSW = 0.1757

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.2240

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G27330

Predicted

two hybrid

FSW = 0.0123

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO OXIDATIVE STRESS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273501) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT3G48960

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0612

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13C)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454