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AT3G49010 - ( ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) structural constituent of ribosome )

141 Proteins interacs with AT3G49010

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.4111	Class C: vacuole plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.3819	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.4650	Class C: vacuole plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.3098	Class C: vacuole plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.3173	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.4584	Class C: vacuole plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2335	Class C: vacuole plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.4425	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G01280	Predicted Affinity Capture-MS	FSW = 0.0075	Class C: vacuole plasma membrane	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT2G36160	Predicted Affinity Capture-MS	FSW = 0.1104	Class C: vacuole plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.1844	Class C: vacuole plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT4G38510	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0904	Class C: vacuole plasma membrane	VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE
AT3G12580	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0533	Class C: vacuole plasma membrane	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.3182	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.3287	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.2684	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT5G27850	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1944	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT5G19320	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0688	Class C: vacuole nucleus	RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.3770	Class C: vacuole nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G63400	Predicted biochemical	FSW = 0.0055	Class C: vacuole	ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.3223	Class C: vacuole	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.1845	Class C: vacuole	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.4728	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT3G22110	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0399	Class C: vacuole	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800	Predicted Affinity Capture-MS	FSW = 0.0266	Class C: vacuole	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2310	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.1122	Class C: plasma membrane nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G01610	Predicted Affinity Capture-MS	FSW = 0.0824	Class C: plasma membrane nucleus	CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.3516	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.4508	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.3516	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.3001	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.3522	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT1G18540	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0708	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT5G09650	Predicted Affinity Capture-MS	FSW = 0.0306	Class C: plasma membrane	ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.3378	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.3880	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT5G52640	Predicted Synthetic Lethality	FSW = 0.0203	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G63290	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0487	Class C: plasma membrane	RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT5G23900	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0310	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.4649	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1710	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.3465	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT5G12150	Predicted two hybrid	FSW = 0.0157	Class C: plasma membrane	PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN / RHOGAP DOMAIN-CONTAINING PROTEIN
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.4933	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.3097	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G41880	Predicted Affinity Capture-MS	FSW = 0.1454	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT1G74270	Predicted Affinity Capture-MS	FSW = 0.2135	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.3742	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53430	Predicted Affinity Capture-MS	FSW = 0.1409	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.2930	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3964	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0463	Class C: nucleus	HISTONE H4
AT1G77840	Predicted Affinity Capture-MS	FSW = 0.1296	Class C: nucleus	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT5G04600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2269	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G57150	Predicted Affinity Capture-MS	FSW = 0.1083	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.4632	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.2284	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G14170	Predicted two hybrid two hybrid	FSW = 0.0102	Class C: nucleus	CHC1
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4007	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700	Predicted Affinity Capture-MS	FSW = 0.2409	Class C: nucleus	60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.1542	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.2841	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.1219	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55920	Predicted Affinity Capture-MS	FSW = 0.1725	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G58660	Predicted Affinity Capture-MS	FSW = 0.2163	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0293	Class C: nucleus	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G54350	Predicted two hybrid	FSW = 0.0278	Class C: nucleus	EMB1967 (EMBRYO DEFECTIVE 1967)
AT1G65440	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0565	Class C: nucleus	GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT1G72560	Predicted synthetic growth defect	FSW = 0.0091	Class C: nucleus	PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT3G55620	Predicted Affinity Capture-MS	FSW = 0.1387	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G76860	Predicted two hybrid	FSW = 0.0029	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.3618	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.2581	Class C: nucleus	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G15550	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0964	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G04940	Predicted Synthetic Rescue	FSW = 0.0405	Unknown	SCRAMBLASE-RELATED
AT4G26970	Predicted Affinity Capture-MS	FSW = 0.0212	Unknown	ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G21640	Predicted Affinity Capture-MS	FSW = 0.0213	Unknown	NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.4787	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G19660	Predicted Affinity Capture-MS	FSW = 0.0343	Unknown	WOUND-RESPONSIVE FAMILY PROTEIN
AT5G15450	Predicted Synthetic Rescue	FSW = 0.0199	Unknown	CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G23430	Predicted Synthetic Lethality	FSW = 0.0188	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G07180	Predicted Affinity Capture-MS	FSW = 0.0017	Unknown	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT5G26130	Predicted Affinity Capture-MS	FSW = 0.0131	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXTRACELLULAR REGION EXPRESSED IN ROOT LEAF EXPRESSED DURING LP04 FOUR LEAVES VISIBLE CONTAINS INTERPRO DOMAIN/S ALLERGEN V5/TPX-1 RELATED CONSERVED SITE (INTERPROIPR018244) ALLERGEN V5/TPX-1 RELATED (INTERPROIPR001283) SCP-LIKE EXTRACELLULAR (INTERPROIPR014044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PATHOGENESIS-RELATED PROTEIN PUTATIVE (TAIRAT4G337101) HAS 2282 BLAST HITS TO 2195 PROTEINS IN 288 SPECIES ARCHAE - 0 BACTERIA - 49 METAZOA - 1341 FUNGI - 231 PLANTS - 611 VIRUSES - 0 OTHER EUKARYOTES - 50 (SOURCE NCBI BLINK)
AT3G08730	Predicted Phenotypic Suppression	FSW = 0.0192	Unknown	PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.1995	Unknown	GTP-BINDING PROTEIN-RELATED
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.2186	Unknown	GLYCINE-RICH PROTEIN
AT3G22660	Predicted Affinity Capture-MS	FSW = 0.1080	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4532	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.3864	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.1844	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT2G05170	Predicted Phenotypic Suppression	FSW = 0.0095	Unknown	ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT5G61330	Predicted two hybrid two hybrid	FSW = 0.0258	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT5G25800	Predicted two hybrid two hybrid	FSW = 0.0118	Unknown	EXONUCLEASE FAMILY PROTEIN
AT1G22240	Predicted Affinity Capture-MS	FSW = 0.1300	Unknown	APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G68200	Predicted Affinity Capture-MS	FSW = 0.0151	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT3G08650	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1363	Unknown	METAL TRANSPORTER FAMILY PROTEIN
AT3G15460	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1677	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.4387	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.3552	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3984	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT1G01930	Predicted Affinity Capture-MS	FSW = 0.0069	Unknown	ZINC FINGER PROTEIN-RELATED
AT1G03530	Predicted Affinity Capture-MS	FSW = 0.1569	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G05830	Predicted Synthetic Rescue	FSW = 0.0289	Unknown	ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G13580	Predicted Affinity Capture-MS	FSW = 0.0082	Unknown	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G15440	Predicted Affinity Capture-MS	FSW = 0.1121	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G17760	Predicted Affinity Capture-MS	FSW = 0.0299	Unknown	CSTF77 PROTEIN BINDING
AT1G18830	Predicted Affinity Capture-MS	FSW = 0.0416	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G21370	Predicted Synthetic Rescue	FSW = 0.0138	Unknown	UNKNOWN PROTEIN
AT1G26270	Predicted Affinity Capture-Western	FSW = 0.0207	Unknown	PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT1G33110	Predicted Phenotypic Suppression	FSW = 0.0073	Unknown	MATE EFFLUX FAMILY PROTEIN
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.2980	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT1G78290	Predicted Phenotypic Suppression	FSW = 0.0142	Unknown	SERINE/THREONINE PROTEIN KINASE PUTATIVE
AT2G27170	Predicted Affinity Capture-MS	FSW = 0.0235	Unknown	TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT2G36930	Predicted Affinity Capture-MS	FSW = 0.0689	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0419	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G41530	Predicted Phenotypic Suppression	FSW = 0.0390	Unknown	SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G51880	Predicted Synthetic Lethality	FSW = 0.0234	Unknown	HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G57140	Predicted biochemical	FSW = 0.0055	Unknown	PATATIN-RELATED
AT4G11820	Predicted Affinity Capture-MS	FSW = 0.0613	Unknown	MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.1661	Unknown	ATRLI2 TRANSPORTER
AT4G32850	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0597	Unknown	NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT5G09630	Predicted Phenotypic Suppression	FSW = 0.0111	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G16040	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0266	Unknown	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G19360	Predicted Affinity Capture-MS	FSW = 0.0142	Unknown	CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G19820	Predicted Phenotypic Suppression	FSW = 0.0258	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G24410	Predicted Affinity Capture-MS	FSW = 0.0286	Unknown	GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G24670	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0025	Unknown	CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G26250	Predicted Synthetic Lethality Dosage Growth Defect	FSW = 0.0056	Unknown	SUGAR TRANSPORTER PUTATIVE
AT5G40530	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.0731	Unknown	EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK)
AT5G46190	Predicted Affinity Capture-MS	FSW = 0.0586	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT5G49970	Predicted Synthetic Rescue	FSW = 0.0221	Unknown	ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G60870	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0586	Unknown	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.4628	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G16265	Predicted Synthetic Lethality	FSW = 0.0286	Unknown	NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G11500	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0073	Unknown	UNKNOWN PROTEIN
AT5G14520	Predicted Affinity Capture-MS	FSW = 0.1513	Unknown	PESCADILLO-RELATED
AT5G46840	Predicted Affinity Capture-MS	FSW = 0.1757	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.2240	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G27330	Predicted two hybrid	FSW = 0.0123	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO OXIDATIVE STRESS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273501) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT3G48960	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0612	Unknown	60S RIBOSOMAL PROTEIN L13 (RPL13C)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G49010 - ( ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) structural constituent of ribosome )

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