Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57150 - ( NAP57 (Arabidopsis thaliana homologue of NAP57) pseudouridine synthase )

86 Proteins interacs with AT3G57150
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01370

Experimental

FSW = 0.0068

Class B:

unclear

nucleus

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT3G09630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1350

Class C:

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.0632

Class C:

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G47610

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1673

Class C:

nucleus

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.1083

Class C:

nucleus

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G07110

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0695

Class C:

nucleus

60S RIBOSOMAL PROTEIN L13A (RPL13AA)
AT3G03920

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

interaction prediction

Co-expression

FSW = 0.1482

Class C:

nucleus

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3025

Class C:

nucleus

RNA BINDING
AT2G04390

Predicted

Affinity Capture-MS

FSW = 0.0837

Class C:

nucleus

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT2G25880

Predicted

Affinity Capture-MS

FSW = 0.0143

Class C:

nucleus

ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE
AT2G45490

Predicted

Affinity Capture-MS

FSW = 0.0205

Class C:

nucleus

ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.2062

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G08180

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2390

Class C:

nucleus

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G25630

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2918

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G16810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2279

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT1G48920

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2115

Class C:

nucleus

ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G44200

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0750

Class C:

nucleus

CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT5G54910

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2442

Class C:

nucleus

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.1544

Class C:

nucleus

60S RIBOSOMAL PROTEIN-RELATED
AT3G05060

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3373

Class C:

nucleus

SAR DNA-BINDING PROTEIN PUTATIVE
AT3G06720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0248

Class C:

nucleus

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT3G12860

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3045

Class C:

nucleus

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.1634

Class C:

nucleus

RNA HELICASE PUTATIVE
AT1G56110

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1682

Class C:

nucleus

NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT1G30590

Predicted

interologs mapping

FSW = 0.0120

Class C:

nucleus

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G13370

Predicted

Affinity Capture-MS

FSW = 0.0321

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.0644

Class C:

nucleus

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0632

Class C:

nucleus

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT3G18600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1208

Class C:

nucleus

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G20490

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1225

Class C:

nucleus

NOP10 RNA BINDING
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.2065

Class C:

nucleus

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT2G17360

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1570

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.2374

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G06530

Predicted

Affinity Capture-MS

FSW = 0.2332

Unknown

BINDING
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.1773

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1079

Unknown

RIBOSOMAL PROTEIN-RELATED
AT5G52640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0222

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G76810Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1611

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT3G01310

Predicted

Affinity Capture-MS

FSW = 0.0596

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G60790

Predicted

Affinity Capture-MS

FSW = 0.0710

Unknown

ATGCN1 TRANSPORTER
AT4G26840

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0372

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.1589

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27970

Predicted

two hybrid

FSW = 0.0043

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G03530

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.1336

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G08260

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0189

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0663

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT2G21440

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2090

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G34357Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2426

Unknown

BINDING
AT2G34750

Predicted

interologs mapping

FSW = 0.0023

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.1310

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24080

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1400

Unknown

KRR1 FAMILY PROTEIN
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.1317

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G56150

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0393

Unknown

EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1005

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1359

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G31970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1941

Unknown

STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G45231

Predicted

Reconstituted Complex

FSW = 0.0400

Unknown

WW DOMAIN-CONTAINING PROTEIN
AT1G61040

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.2077

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT1G74250

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G80410

Predicted

Affinity Capture-MS

FSW = 0.0287

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G40430

Predicted

Affinity Capture-MS

FSW = 0.1008

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT3G01160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1942

Unknown

UNKNOWN PROTEIN
AT3G46960Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0718

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G60240

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1003

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT5G08420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2481

Unknown

RNA BINDING
AT5G15070

Predicted

Affinity Capture-MS

FSW = 0.0303

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G15870

Predicted

Affinity Capture-MS

FSW = 0.0390

Unknown

GLYCOSYL HYDROLASE FAMILY 81 PROTEIN
AT5G19300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0430

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G46190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0778

Unknown

KH DOMAIN-CONTAINING PROTEIN
AT5G49930

Predicted

Affinity Capture-MS

FSW = 0.0613

Unknown

EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G66100

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0824

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT4G07410

Predicted

Affinity Capture-MS

FSW = 0.0988

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G01320

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0375

Unknown

PYRUVATE DECARBOXYLASE PUTATIVE
AT5G65900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2732

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G18310Predicted

Affinity Capture-MS

FSW = 0.0449

Unknown

GLYCOSYL HYDROLASE FAMILY 81 PROTEIN
AT1G02690

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0216

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT4G33070

Predicted

Affinity Capture-MS

FSW = 0.0066

Unknown

PYRUVATE DECARBOXYLASE PUTATIVE
AT5G04430

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0499

Unknown

BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING
AT1G21160

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1322

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT3G22860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0222

Unknown

TIF3C2 TRANSLATION INITIATION FACTOR
AT4G35890

Predicted

Affinity Capture-MS

FSW = 0.0802

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT1G27470

Predicted

Affinity Capture-MS

FSW = 0.0673

Unknown

TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT1G22760

Predicted

Affinity Capture-MS

FSW = 0.0776

Unknown

PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G36240

Predicted

Affinity Capture-MS

FSW = 0.0718

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT2G40010

Predicted

Affinity Capture-MS

FSW = 0.0415

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454