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AT3G57150 - ( NAP57 (Arabidopsis thaliana homologue of NAP57) pseudouridine synthase )

86 Proteins interacs with AT3G57150

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G01370	Experimental	FSW = 0.0068	Class B: unclear nucleus Class D: nucleus (p = 0.78) cytosol (p = 0.67)	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT3G09630	Predicted Affinity Capture-MS Co-expression	FSW = 0.1350	Class C: nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.0632	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G47610	Predicted Affinity Capture-MS Co-expression	FSW = 0.1673	Class C: nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.1083	Class C: nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G07110	Predicted Affinity Capture-MS Co-expression	FSW = 0.0695	Class C: nucleus	60S RIBOSOMAL PROTEIN L13A (RPL13AA)
AT3G03920	Predicted Reconstituted Complex Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex interaction prediction Co-expression	FSW = 0.1482	Class C: nucleus	GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G11964	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3025	Class C: nucleus	RNA BINDING
AT2G04390	Predicted Affinity Capture-MS	FSW = 0.0837	Class C: nucleus	40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT2G25880	Predicted Affinity Capture-MS	FSW = 0.0143	Class C: nucleus	ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE
AT2G45490	Predicted Affinity Capture-MS	FSW = 0.0205	Class C: nucleus	ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.2062	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G08180	Predicted Reconstituted Complex Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2390	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G25630	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2918	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G16810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2279	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT1G48920	Predicted Affinity Capture-MS Co-expression	FSW = 0.2115	Class C: nucleus	ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G44200	Predicted Synthetic Lethality Co-expression	FSW = 0.0750	Class C: nucleus	CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT5G54910	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2442	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G58660	Predicted Affinity Capture-MS	FSW = 0.1544	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT3G05060	Predicted Affinity Capture-MS Co-expression	FSW = 0.3373	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G06720	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0248	Class C: nucleus	IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT3G12860	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3045	Class C: nucleus	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.1634	Class C: nucleus	RNA HELICASE PUTATIVE
AT1G56110	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1682	Class C: nucleus	NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT1G30590	Predicted interologs mapping	FSW = 0.0120	Class C: nucleus	RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G13370	Predicted Affinity Capture-MS	FSW = 0.0321	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G08350	Predicted Affinity Capture-MS	FSW = 0.0644	Class C: nucleus	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210	Predicted Affinity Capture-MS	FSW = 0.0632	Class C: nucleus	STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT3G18600	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1208	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G20490	Predicted Affinity Capture-Western Reconstituted Complex Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1225	Class C: nucleus	NOP10 RNA BINDING
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.2065	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT2G17360	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1570	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.2374	Unknown	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G06530	Predicted Affinity Capture-MS	FSW = 0.2332	Unknown	BINDING
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.1773	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380	Predicted Affinity Capture-MS Co-expression	FSW = 0.1079	Unknown	RIBOSOMAL PROTEIN-RELATED
AT5G52640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0222	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G76810	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1611	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT3G01310	Predicted Affinity Capture-MS	FSW = 0.0596	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G60790	Predicted Affinity Capture-MS	FSW = 0.0710	Unknown	ATGCN1 TRANSPORTER
AT4G26840	Predicted Affinity Capture-MS Co-expression	FSW = 0.0372	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.1589	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27970	Predicted two hybrid	FSW = 0.0043	Unknown	CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G03530	Predicted two hybrid Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interaction prediction Co-expression	FSW = 0.1336	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G08260	Predicted Affinity Capture-MS Co-expression	FSW = 0.0189	Unknown	TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G49760	Predicted Affinity Capture-MS	FSW = 0.0663	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT2G21440	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2090	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G34357	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2426	Unknown	BINDING
AT2G34750	Predicted interologs mapping	FSW = 0.0023	Unknown	RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.1310	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1400	Unknown	KRR1 FAMILY PROTEIN
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.1317	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G56150	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0393	Unknown	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT1G15440	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1005	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1359	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G31970	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1941	Unknown	STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G45231	Predicted Reconstituted Complex	FSW = 0.0400	Unknown	WW DOMAIN-CONTAINING PROTEIN
AT1G61040	Predicted Affinity Capture-MS	FSW = 0.0172	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G72320	Predicted Affinity Capture-MS	FSW = 0.2077	Unknown	APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT1G74250	Predicted Affinity Capture-MS	FSW = 0.0082	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G80410	Predicted Affinity Capture-MS	FSW = 0.0287	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G40430	Predicted Affinity Capture-MS	FSW = 0.1008	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT3G01160	Predicted Affinity Capture-MS Co-expression	FSW = 0.1942	Unknown	UNKNOWN PROTEIN
AT3G46960	Predicted Affinity Capture-MS Co-expression	FSW = 0.0718	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G60240	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1003	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT5G08420	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2481	Unknown	RNA BINDING
AT5G15070	Predicted Affinity Capture-MS	FSW = 0.0303	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G15870	Predicted Affinity Capture-MS	FSW = 0.0390	Unknown	GLYCOSYL HYDROLASE FAMILY 81 PROTEIN
AT5G19300	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0430	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G46190	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0778	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT5G49930	Predicted Affinity Capture-MS	FSW = 0.0613	Unknown	EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G66100	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0824	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT4G07410	Predicted Affinity Capture-MS	FSW = 0.0988	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G01320	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0375	Unknown	PYRUVATE DECARBOXYLASE PUTATIVE
AT5G65900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2732	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G18310	Predicted Affinity Capture-MS	FSW = 0.0449	Unknown	GLYCOSYL HYDROLASE FAMILY 81 PROTEIN
AT1G02690	Predicted Affinity Capture-MS Co-expression	FSW = 0.0216	Unknown	IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT4G33070	Predicted Affinity Capture-MS	FSW = 0.0066	Unknown	PYRUVATE DECARBOXYLASE PUTATIVE
AT5G04430	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0499	Unknown	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING
AT1G21160	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1322	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT3G22860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0222	Unknown	TIF3C2 TRANSLATION INITIATION FACTOR
AT4G35890	Predicted Affinity Capture-MS	FSW = 0.0802	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT1G27470	Predicted Affinity Capture-MS	FSW = 0.0673	Unknown	TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT1G22760	Predicted Affinity Capture-MS	FSW = 0.0776	Unknown	PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G36240	Predicted Affinity Capture-MS	FSW = 0.0718	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT2G40010	Predicted Affinity Capture-MS	FSW = 0.0415	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G57150 - ( NAP57 (Arabidopsis thaliana homologue of NAP57) pseudouridine synthase )

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