Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G04430 - ( BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) nucleic acid binding )
24 Proteins interacs with AT5G04430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT5G40950 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0788
| Unknown | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G20920 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0402
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT4G17520 | Predictedinteraction prediction | FSW = 0.0658
| Unknown | NUCLEAR RNA-BINDING PROTEIN PUTATIVE |
AT4G16830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0078
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT3G57150 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0499
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT4G18040 | Predictedinteraction prediction | FSW = 0.0606
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT1G48160 | Predictedtwo hybridinteraction prediction | FSW = 0.0212
| Unknown | SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE |
AT5G64390 | Predictedtwo hybridtwo hybrid | FSW = 0.0356
| Unknown | HEN4 (HUA ENHANCER 4) RNA BINDING / NUCLEIC ACID BINDING |
AT2G20330 | Predictedtwo hybrid | FSW = 0.0741
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G54630 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT5G46190 | Predictedtwo hybridtwo hybrid | FSW = 0.2830
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT1G55150 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0247
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT5G19300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0390
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
AT1G29550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0813
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0673
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G60240 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0836
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT1G10730 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G04160 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0086
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0131
| Unknown | ENDONUCLEASE PUTATIVE |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.0214
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G51580 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454