Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10730 - ( clathrin adaptor complexes medium subunit family protein )
31 Proteins interacs with AT1G10730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G50850 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT3G08530 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1070
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.0832
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT4G38600 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT5G46630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1933
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G71820 | PredictedPhenotypic Enhancement | FSW = 0.0423
| Unknown | SEC6 |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT4G11380 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridEnriched domain pairCo-expression | FSW = 0.1671
| Unknown | BETA-ADAPTIN PUTATIVE |
AT4G23460 | Predictedin vivoEnriched domain pairCo-expression | FSW = 0.1939
| Unknown | BETA-ADAPTIN PUTATIVE |
AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.0914
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT4G02930 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT5G22100 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | RNA CYCLASE FAMILY PROTEIN |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.0470
| Unknown | UNKNOWN PROTEIN |
AT2G32850 | Predictedin vitroAffinity Capture-MSin vitro | FSW = 0.0436
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G60780 | Predictedin vivoAffinity Capture-MSin vivoGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6531
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT1G60070 | PredictedAffinity Capture-MSin vivoEnriched domain pairGene neighbors methodCo-expression | FSW = 0.2094
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G17380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.1795
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G23900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSEnriched domain pairGene neighbors method | FSW = 0.2560
| Unknown | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G55810 | PredictedAffinity Capture-MS | FSW = 0.0611
| Unknown | ATNMNAT (A THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE) NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE/ NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G21440 | PredictedAffinity Capture-MS | FSW = 0.0901
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.0273
| Unknown | RNA BINDING |
AT3G24080 | PredictedAffinity Capture-MS | FSW = 0.0450
| Unknown | KRR1 FAMILY PROTEIN |
AT1G52930 | PredictedAffinity Capture-MS | FSW = 0.1208
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G04430 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING |
AT1G13160 | PredictedAffinity Capture-MS | FSW = 0.0897
| Unknown | SDA1 FAMILY PROTEIN |
AT4G24550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2252
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G56590 | PredictedPhylogenetic profile method | FSW = 0.1422
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454