Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G43170 - ( ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) structural constituent of ribosome )
55 Proteins interacs with AT1G43170| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G01610
   | PredictedAffinity Capture-MS | FSW = 0.1436
| Class C:plasma membranenucleus | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G60790
| PredictedAffinity Capture-MS | FSW = 0.0513
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
| AT4G11380
| PredictedAffinity Capture-MS | FSW = 0.0122
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1786
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G55620
| PredictedAffinity Capture-MS | FSW = 0.1818
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT3G23620
| PredictedAffinity Capture-MS | FSW = 0.2559
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT2G19385
| PredictedAffinity Capture-MS | FSW = 0.0512
| Class C:nucleus | ZINC ION BINDING |
| AT4G26600
| PredictedAffinity Capture-MS | FSW = 0.1175
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G72440
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1578
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G16810
| PredictedAffinity Capture-MS | FSW = 0.2626
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT3G07050
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2432
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
| AT2G37990
| PredictedAffinity Capture-WesternCo-expression | FSW = 0.1412
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
| AT5G08740
| Predictedtwo hybrid | FSW = 0.0186
| Unknown | NDC1 (NAD(P)H DEHYDROGENASE C1) NADH DEHYDROGENASE |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3109
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT2G40360
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2457
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G51810
| Predictedtwo hybrid | FSW = 0.0159
| Unknown | GA20OX2 (GIBBERELLIN 20 OXIDASE 2) GIBBERELLIN 20-OXIDASE |
| AT4G23860
| Predictedtwo hybrid | FSW = 0.0385
| Unknown | PHD FINGER PROTEIN-RELATED |
| AT1G61580
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3572
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G17620
| PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | GLYCINE-RICH PROTEIN |
| AT5G03730
| Predictedtwo hybrid | FSW = 0.0070
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0024
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT2G04660
| Predictedtwo hybrid | FSW = 0.0133
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G48470
| PredictedPhenotypic Enhancement | FSW = 0.0067
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
| AT4G18465 | Predictedtwo hybrid | FSW = 0.0110
| Unknown | RNA HELICASE PUTATIVE |
| AT5G22920
| Predictedtwo hybrid | FSW = 0.0186
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G47480
| Predictedtwo hybrid | FSW = 0.0172
| Unknown | UNKNOWN PROTEIN |
| AT3G54230
| Predictedtwo hybrid | FSW = 0.0174
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT5G58020
| Predictedtwo hybrid | FSW = 0.0373
| Unknown | UNKNOWN PROTEIN |
| AT2G02570
| PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | NUCLEIC ACID BINDING |
| AT2G17870
| PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | COLD-SHOCK DNA-BINDING FAMILY PROTEIN |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT2G29400
| PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G52980
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1555
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT3G01160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0486
| Unknown | UNKNOWN PROTEIN |
| AT5G14520
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2304
| Unknown | PESCADILLO-RELATED |
| AT1G08410
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0889
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT2G19540
| PredictedAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.0512
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G13640
| PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | ATRLI1 TRANSPORTER |
| AT3G56510
| PredictedAffinity Capture-MS | FSW = 0.0328
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
| AT5G06360
| PredictedAffinity Capture-MS | FSW = 0.2224
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT3G16840
| PredictedAffinity Capture-MS | FSW = 0.0756
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT3G11450
| PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
| AT2G36930
| PredictedAffinity Capture-MS | FSW = 0.1217
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT2G34357 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0533
| Unknown | BINDING |
| AT2G27170
| PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
| AT2G21440
| PredictedAffinity Capture-MS | FSW = 0.1979
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G18220
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2240
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G03820
| PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.0592
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G52930
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3008
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G21160
| PredictedAffinity Capture-MS | FSW = 0.0611
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT1G16280
| PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G13160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1981
| Unknown | SDA1 FAMILY PROTEIN |
| AT1G10730
| PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT1G04480 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0940
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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