Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54230 - ( nucleic acid binding / nucleotide binding / zinc ion binding )
31 Proteins interacs with AT3G54230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G27090 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT1G43170 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G20450 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G19910 | Predictedtwo hybrid | FSW = 0.0343
| Unknown | AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT4G38920 | Predictedtwo hybrid | FSW = 0.0643
| Unknown | ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) ATPASE |
AT1G10630 | Predictedtwo hybrid | FSW = 0.0494
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT2G39990 | Predictedtwo hybrid | FSW = 0.0336
| Unknown | EIF2 TRANSLATION INITIATION FACTOR |
AT2G07671 | Predictedtwo hybrid | FSW = 0.0336
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT5G35530 | Predictedtwo hybridtwo hybrid | FSW = 0.0214
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT5G59170 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | PROLINE-RICH FAMILY PROTEIN |
AT3G56340 | Predictedtwo hybrid | FSW = 0.0131
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
AT3G10090 | Predictedtwo hybrid | FSW = 0.0490
| Unknown | 40S RIBOSOMAL PROTEIN S28 (RPS28A) |
AT5G64140 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | RPS28 (RIBOSOMAL PROTEIN S28) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G61580 | Predictedtwo hybrid | FSW = 0.0075
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G47110 | Predictedtwo hybrid | FSW = 0.0152
| Unknown | UBQ6 PROTEIN BINDING |
AT3G18860 | Predictedtwo hybridtwo hybrid | FSW = 0.0035
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G23070 | Predictedtwo hybrid | FSW = 0.0093
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G16260 | Predictedtwo hybrid | FSW = 0.0784
| Unknown | TRZ4 (TRNASE Z 4) 3-TRNA PROCESSING ENDORIBONUCLEASE/ CATALYTIC |
AT4G24740 | Predictedtwo hybrid | FSW = 0.0321
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
AT4G32660 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G32720 | Predictedtwo hybridtwo hybrid | FSW = 0.0134
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT5G08420 | Predictedtwo hybridtwo hybrid | FSW = 0.0049
| Unknown | RNA BINDING |
AT5G14670 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G43850 | Predictedtwo hybrid | FSW = 0.0627
| Unknown | ARD4 ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT5G46410 | Predictedtwo hybrid | FSW = 0.0261
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT5G62640 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | PROLINE-RICH FAMILY PROTEIN |
AT5G67380 | Predictedtwo hybrid | FSW = 0.0066
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G08320 | Predictedtwo hybrid | FSW = 0.0094
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G25800 | Predictedtwo hybrid | FSW = 0.0711
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT4G14710 | Predictedtwo hybrid | FSW = 0.0468
| Unknown | ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454