Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G19910 - ( AVA-P2 ATPase/ proton-transporting ATPase rotational mechanism )
26 Proteins interacs with AT1G19910| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
| AT1G33120 | Predictedtwo hybrid | FSW = 0.0307
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L9 (RPL90B) |
AT1G78900
   | PredictedAffinity Capture-Western | FSW = 0.0182
| Class C:vacuoleplasma membrane | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT2G01250
| Predictedtwo hybrid | FSW = 0.0057
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT5G66680
| Predictedtwo hybridinteraction prediction | FSW = 0.0120
| Class C:vacuoleplasma membrane | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
| AT2G16510 | PredictedPhylogenetic profile method | FSW = 0.3125
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE 16 KDA PROTEOLIPID SUBUNIT 5 / V-ATPASE 16 KDA PROTEOLIPID SUBUNIT 5 (AVAP5) |
| AT4G38920 | PredictedPhylogenetic profile method | FSW = 0.3483
| Class C:vacuoleplasma membrane | ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) ATPASE |
| AT4G34720
| PredictedPhylogenetic profile method | FSW = 0.2841
| Class C:vacuoleplasma membrane | AVA-P1 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT2G44610
| Predictedinteraction prediction | FSW = 0.0298
| Class C:vacuoleplasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT1G07940 | Predictedtwo hybrid | FSW = 0.0106
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT1G75630
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3125
| Class C:plasma membrane | AVA-P4 ATPASE |
| AT1G17745
| Predictedtwo hybridinteraction prediction | FSW = 0.0106
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
| AT2G22290
| PredictedSynthetic Lethality | FSW = 0.0256
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
| AT3G57650
| Predictedtwo hybrid | FSW = 0.1109
| Unknown | LPAT2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE |
| AT2G31300
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0364
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
| AT2G30910
| PredictedSynthetic Lethality | FSW = 0.0400
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
| AT2G04845
| Predictedtwo hybridtwo hybrid | FSW = 0.0750
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
| AT3G54230
| Predictedtwo hybrid | FSW = 0.0343
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT1G13580
| PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0176
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
| AT1G54140
| PredictedSynthetic Lethality | FSW = 0.0099
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT3G18430
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1068
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT3G45630
| Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0176
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G39830
| Predictedtwo hybridinteraction prediction | FSW = 0.0324
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
| AT5G10260
| PredictedSynthetic Lethality | FSW = 0.0206
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT4G32530
| Predictedco-fractionationCo-fractionation | FSW = 0.0626
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
| AT2G25610
| Predictedco-fractionationCo-fractionation | FSW = 0.0898
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
| AT1G51260
| Predictedtwo hybrid | FSW = 0.0627
| Unknown | LPAT3 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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