Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G25610 - ( H+-transporting two-sector ATPase C subunit family protein )
18 Proteins interacs with AT2G25610Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G19910 | Predictedco-fractionationCo-fractionation | FSW = 0.0898
| Unknown | AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G22630 | Predictedinterologs mapping | FSW = 0.0320
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G07680 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G40420 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G55360 | Predictedtwo hybrid | FSW = 0.1047
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT1G23800 | Predictedtwo hybrid | FSW = 0.0363
| Unknown | ALDH2B7 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT1G47240 | Predictedtwo hybrid | FSW = 0.0544
| Unknown | NRAMP2 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT1G56450 | Predictedinterologs mapping | FSW = 0.0632
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0230
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0169
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT3G18430 | PredictedSynthetic Lethality | FSW = 0.0546
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.0195
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G24470 | Predictedtwo hybrid | FSW = 0.1029
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G16570 | Predictedtwo hybrid | FSW = 0.1694
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G31470 | Predictedtwo hybrid | FSW = 0.2315
| Unknown | NFD4 (NUCLEAR FUSION DEFECTIVE 4) |
AT1G08750 | Predictedtwo hybrid | FSW = 0.0900
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT5G01230 | Predictedtwo hybrid | FSW = 0.1023
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT4G32530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4532
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454