Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07680 - ( emp24/gp25L/p24 family protein )
45 Proteins interacs with AT3G07680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G14010 | Predictedtwo hybrid | FSW = 0.0210
| Class C:vacuolegolgi | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G03860 | PredictedAffinity Capture-MS | FSW = 0.0128
| Class C:vacuole | ATPHB2 (PROHIBITIN 2) |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.0041
| Class C:vacuole | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0223
| Class C:vacuole | HISTONE H4 |
AT2G27490 | Predictedinterologs mapping | FSW = 0.0303
| Class C:vacuole | ATCOAE ATP BINDING / DEPHOSPHO-COA KINASE |
AT5G66680 | Predictedtwo hybrid | FSW = 0.0269
| Class C:vacuole | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0079
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0225
| Class C:vacuole | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT1G07420 | Predictedtwo hybridCo-expression | FSW = 0.0120
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT1G80190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1769
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT1G48860 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G02780 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.0729
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G48570 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G18600 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G13560 | Predictedtwo hybrid | FSW = 0.0319
| Unknown | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0025
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G01400 | Predictedtwo hybrid | FSW = 0.0196
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG4 TRANSPORT (INTERPROIPR013167) PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G461001) HAS 11639 BLAST HITS TO 3936 PROTEINS IN 180 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 206 FUNGI - 141 PLANTS - 11004 VIRUSES - 0 OTHER EUKARYOTES - 286 (SOURCE NCBI BLINK) |
AT4G34540 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT3G04710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0468
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.0718
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G38600 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G62770 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0725
| Unknown | ATATG18A |
AT4G04950 | PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G35520 | PredictedColocalization | FSW = 0.0101
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G24840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0674
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G54800 | PredictedAffinity Capture-MS | FSW = 0.1026
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | H2AXA DNA BINDING |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G06080 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G09080 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | BIP3 ATP BINDING |
AT1G09580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0822
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT4G15770 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | RNA BINDING / PROTEIN BINDING |
AT2G35210 | Predictedinterologs mapping | FSW = 0.0133
| Unknown | RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G16560 | Predictedinterologs mapping | FSW = 0.0156
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT2G34980 | Predictedtwo hybrid | FSW = 0.0245
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G25610 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT1G31470 | Predictedtwo hybridCo-expression | FSW = 0.0459
| Unknown | NFD4 (NUCLEAR FUSION DEFECTIVE 4) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454