Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G09080 - ( BIP3 ATP binding )
30 Proteins interacs with AT1G09080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G28540 | PredictedPhylogenetic profile method | FSW = 0.0756
| Unknown | BIP1 ATP BINDING |
AT5G66680 | PredictedSynthetic Lethality | FSW = 0.1067
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT5G42020 | PredictedPhylogenetic profile method | FSW = 0.0392
| Unknown | BIP2 ATP BINDING |
AT3G07680 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G43750 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
AT5G63840 | PredictedPhenotypic Enhancement | FSW = 0.1053
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT4G19490 | PredictedAffinity Capture-MS | FSW = 0.0914
| Unknown | PROTEIN BINDING |
AT1G79940 | PredictedSynthetic RescuebiochemicalReconstituted ComplexSynthetic LethalitySynthetic Rescue | FSW = 0.2531
| Unknown | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G09210 | PredictedPhenotypic Enhancement | FSW = 0.2431
| Unknown | CALRETICULIN 2 (CRT2) |
AT1G29310 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT5G23630 | Predictedinterologs mapping | FSW = 0.0750
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT2G17520 | Predictedinterologs mappingAffinity Capture-Westerninterologs mapping | FSW = 0.0985
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G50500 | PredictedAffinity Capture-MS | FSW = 0.0962
| Unknown | HIT1 (HEAT-INTOLERANT 1) TRANSPORTER |
AT1G71270 | PredictedAffinity Capture-MS | FSW = 0.0427
| Unknown | POK (POKY POLLEN TUBE) |
AT2G39630 | Predictedinterologs mapping | FSW = 0.1427
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT1G18260 | Predictedco-fractionationCo-fractionation | FSW = 0.2613
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT4G33150 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE BIFUNCTIONAL ENZYME |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G08830 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0265
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | H2AXA DNA BINDING |
AT5G17270 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G18830 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G05520 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT2G33735 | Predictedinterologs mapping | FSW = 0.0262
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G22425 | Predictedinterologs mapping | FSW = 0.0617
| Unknown | PEPTIDASE |
AT1G24320 | PredictedPhenotypic Enhancement | FSW = 0.1664
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
AT5G09930 | PredictedGene fusion method | FSW = 0.1984
| Unknown | ATGCN2 TRANSPORTER |
AT5G39980 | PredictedGene fusion method | FSW = 0.2137
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G24560 | PredictedGene fusion method | FSW = 0.2137
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454