AtPIN will be upgraded. Please send your suggestions here

AT5G02530 - ( RNA and export factor-binding protein putative )

111 Proteins interacs with AT5G02530

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G36160	Predicted Affinity Capture-MS Co-expression	FSW = 0.0068	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT1G78900	Predicted Affinity Capture-MS	FSW = 0.0126	Unknown	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G21410	Predicted Affinity Capture-MS	FSW = 0.0112	Unknown	VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.0070	Unknown	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT4G37910	Predicted Affinity Capture-MS	FSW = 0.0024	Unknown	MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT3G07680	Predicted Affinity Capture-MS	FSW = 0.0235	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT2G01690	Predicted Affinity Capture-MS	FSW = 0.0049	Unknown	BINDING
AT5G10350	Predicted Affinity Capture-MS Co-expression	FSW = 0.0103	Unknown	POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT1G16030	Predicted Affinity Capture-MS	FSW = 0.0050	Unknown	HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT1G79280	Predicted Affinity Capture-Western Synthetic Rescue	FSW = 0.0372	Unknown	NUA (NUCLEAR PORE ANCHOR)
AT5G64050	Predicted Affinity Capture-MS	FSW = 0.0094	Unknown	ERS (GLUTAMATE TRNA SYNTHETASE) GLUTAMATE-TRNA LIGASE
AT3G66658	Predicted Affinity Capture-MS	FSW = 0.0064	Unknown	ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G18500	Predicted Affinity Capture-MS	FSW = 0.0251	Unknown	MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4) 2-ISOPROPYLMALATE SYNTHASE
AT1G06380	Predicted Affinity Capture-MS Co-expression	FSW = 0.0870	Unknown	RIBOSOMAL PROTEIN-RELATED
AT2G47250	Predicted Affinity Capture-MS Co-expression	FSW = 0.0525	Unknown	RNA HELICASE PUTATIVE
AT3G11964	Predicted Affinity Capture-MS Co-expression	FSW = 0.1187	Unknown	RNA BINDING
AT2G39460	Predicted Affinity Capture-MS Co-expression	FSW = 0.0407	Unknown	RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G17770	Predicted Affinity Capture-MS	FSW = 0.0039	Unknown	ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE
AT3G51460	Predicted Affinity Capture-MS	FSW = 0.0161	Unknown	RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT5G15680	Predicted Affinity Capture-MS	FSW = 0.0043	Unknown	BINDING
AT2G19480	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0619	Unknown	NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT2G25880	Predicted Affinity Capture-MS	FSW = 0.0052	Unknown	ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE
AT4G26600	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0669	Unknown	NUCLEOLAR PROTEIN PUTATIVE
AT1G17590	Predicted Affinity Capture-MS	FSW = 0.0588	Unknown	NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR
AT5G09860	Predicted Synthetic Lethality in vitro Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Synthetic Lethality two hybrid Co-expression	FSW = 0.0803	Unknown	NUCLEAR MATRIX PROTEIN-RELATED
AT5G54910	Predicted Affinity Capture-MS Co-expression	FSW = 0.0636	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G01770	Predicted Affinity Capture-MS	FSW = 0.0094	Unknown	ATBET10 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10) DNA BINDING
AT1G03190	Predicted Affinity Capture-MS Co-expression	FSW = 0.0157	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT5G11170	Predicted Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western interologs mapping Reconstituted Complex	FSW = 0.0394	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G34210	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0576	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT2G37990	Predicted Affinity Capture-MS Co-expression	FSW = 0.1379	Unknown	RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT1G03330	Predicted Affinity Capture-MS	FSW = 0.0052	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G15870	Predicted Affinity Capture-MS Co-expression	FSW = 0.0267	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT2G39630	Predicted Affinity Capture-MS	FSW = 0.0076	Unknown	GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN
AT5G41150	Predicted Affinity Capture-MS	FSW = 0.0068	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT3G23890	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0374	Unknown	TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT5G56130	Predicted in vitro Co-expression	FSW = 0.0209	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G07170	Predicted Affinity Capture-MS	FSW = 0.0174	Unknown	LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK)
AT5G61770	Predicted Affinity Capture-MS Co-expression	FSW = 0.0437	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT5G56740	Predicted Affinity Capture-MS Co-expression	FSW = 0.0067	Unknown	HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT5G53770	Predicted Affinity Capture-MS	FSW = 0.0460	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G41880	Predicted Affinity Capture-MS Co-expression	FSW = 0.0198	Unknown	POLA3 DNA PRIMASE
AT5G36290	Predicted Affinity Capture-MS	FSW = 0.0469	Unknown	UNKNOWN PROTEIN
AT5G27990	Predicted Affinity Capture-MS	FSW = 0.0199	Unknown	UNKNOWN PROTEIN
AT5G24840	Predicted Affinity Capture-MS Co-expression	FSW = 0.0135	Unknown	TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G14600	Predicted Affinity Capture-MS Co-expression	FSW = 0.0261	Unknown	TRNA (ADENINE-N1-)-METHYLTRANSFERASE
AT5G14530	Predicted Affinity Capture-MS	FSW = 0.0168	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G13780	Predicted Affinity Capture-MS	FSW = 0.0145	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G13480	Predicted Affinity Capture-MS Co-expression	FSW = 0.0089	Unknown	FY PROTEIN BINDING
AT4G28200	Predicted Affinity Capture-MS Co-expression	FSW = 0.0218	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G26070	Predicted Affinity Capture-MS	FSW = 0.0190	Unknown	MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING
AT4G25970	Predicted Affinity Capture-MS	FSW = 0.0117	Unknown	PSD3 (PHOSPHATIDYLSERINE DECARBOXYLASE 3) PHOSPHATIDYLSERINE DECARBOXYLASE
AT4G21660	Predicted Affinity Capture-MS	FSW = 0.0147	Unknown	PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT4G04950	Predicted Affinity Capture-MS	FSW = 0.0073	Unknown	THIOREDOXIN FAMILY PROTEIN
AT3G59410	Predicted Affinity Capture-MS	FSW = 0.0146	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G46960	Predicted Affinity Capture-MS	FSW = 0.0366	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G24080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0418	Unknown	KRR1 FAMILY PROTEIN
AT3G09670	Predicted Affinity Capture-MS	FSW = 0.0508	Unknown	PWWP DOMAIN-CONTAINING PROTEIN
AT3G01160	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0406	Unknown	UNKNOWN PROTEIN
AT2G44150	Predicted Affinity Capture-MS	FSW = 0.0269	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G40700	Predicted Affinity Capture-MS Co-expression	FSW = 0.0381	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH17)
AT2G39340	Predicted Affinity Capture-MS	FSW = 0.0290	Unknown	SAC3/GANP FAMILY PROTEIN
AT2G32600	Predicted Affinity Capture-MS Co-expression	FSW = 0.0191	Unknown	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT2G22400	Predicted Affinity Capture-MS Co-expression	FSW = 0.0305	Unknown	NOL1/NOP2/SUN FAMILY PROTEIN
AT2G19560	Predicted Affinity Capture-MS	FSW = 0.0136	Unknown	EER5 (ENHANCED ETHYLENE RESPONSE 5)
AT2G18220	Predicted Affinity Capture-MS Co-expression	FSW = 0.0707	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G17380	Predicted Affinity Capture-MS	FSW = 0.0061	Unknown	AP19 PROTEIN BINDING / PROTEIN TRANSPORTER
AT2G16710	Predicted Affinity Capture-MS	FSW = 0.0056	Unknown	HESB-LIKE DOMAIN-CONTAINING PROTEIN
AT1G80410	Predicted Affinity Capture-MS	FSW = 0.0126	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G79150	Predicted Affinity Capture-MS Co-expression	FSW = 0.0446	Unknown	BINDING
AT1G75660	Predicted Affinity Capture-MS	FSW = 0.0184	Unknown	XRN3 5-3 EXORIBONUCLEASE
AT1G64600	Predicted Affinity Capture-MS Co-expression	FSW = 0.0197	Unknown	COPPER ION BINDING / METHYLTRANSFERASE
AT1G61040	Predicted Affinity Capture-MS	FSW = 0.0181	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.0536	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G54390	Predicted Affinity Capture-MS	FSW = 0.0126	Unknown	PHD FINGER PROTEIN-RELATED
AT1G51710	Predicted Affinity Capture-MS	FSW = 0.0214	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G48760	Predicted Affinity Capture-MS	FSW = 0.0068	Unknown	DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G43860	Predicted Affinity Capture-MS	FSW = 0.0136	Unknown	TRANSCRIPTION FACTOR
AT1G42440	Predicted Affinity Capture-MS Co-expression	FSW = 0.0257	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G33390	Predicted Affinity Capture-MS	FSW = 0.0370	Unknown	HELICASE DOMAIN-CONTAINING PROTEIN
AT1G33040	Predicted Affinity Capture-MS Co-expression	FSW = 0.0104	Unknown	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT1G24706	Predicted Affinity Capture-MS Affinity Capture-Western Synthetic Lethality	FSW = 0.0142	Unknown	UNKNOWN PROTEIN
AT1G24470	Predicted Affinity Capture-MS	FSW = 0.0059	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G15420	Predicted Affinity Capture-MS Co-expression	FSW = 0.0048	Unknown	UNKNOWN PROTEIN
AT1G14620	Predicted Affinity Capture-MS Co-expression	FSW = 0.0067	Unknown	DECOY (DECOY)
AT1G13170	Predicted Affinity Capture-MS	FSW = 0.0117	Unknown	ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) OXYSTEROL BINDING
AT1G13160	Predicted Affinity Capture-MS Co-expression	FSW = 0.0294	Unknown	SDA1 FAMILY PROTEIN
AT1G10450	Predicted Affinity Capture-MS	FSW = 0.0204	Unknown	SNL6 (SIN3-LIKE 6)
AT1G09580	Predicted Affinity Capture-MS	FSW = 0.0199	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G08410	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0359	Unknown	GTP-BINDING FAMILY PROTEIN
AT1G06720	Predicted Affinity Capture-MS Co-expression	FSW = 0.0164	Unknown	INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G04950	Predicted Affinity Capture-MS	FSW = 0.0120	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT4G27640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0263	Unknown	IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT5G19820	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex	FSW = 0.0151	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G22760	Predicted Affinity Capture-MS	FSW = 0.1120	Unknown	PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G46840	Predicted Affinity Capture-MS	FSW = 0.0795	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G55150	Predicted Affinity Capture-MS Co-expression	FSW = 0.0158	Unknown	DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT3G48960	Predicted Affinity Capture-MS	FSW = 0.0225	Unknown	60S RIBOSOMAL PROTEIN L13 (RPL13C)
AT2G40010	Predicted Affinity Capture-MS	FSW = 0.0194	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT1G36240	Predicted Affinity Capture-MS	FSW = 0.0277	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G16350	Predicted Affinity Capture-MS	FSW = 0.0362	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT3G60240	Predicted Affinity Capture-MS	FSW = 0.0285	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G12600	Predicted Affinity Capture-MS	FSW = 0.0295	Unknown	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G12340	Predicted Affinity Capture-MS Co-expression	FSW = 0.0263	Unknown	FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G30870	Predicted Affinity Capture-MS	FSW = 0.0304	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT2G23080	Predicted Affinity Capture-MS	FSW = 0.0870	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G07990	Predicted Affinity Capture-MS	FSW = 0.0149	Unknown	SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT1G17720	Predicted Affinity Capture-MS	FSW = 0.0061	Unknown	ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G12990	Predicted Affinity Capture-Western Synthetic Lethality	FSW = 0.0627	Unknown	RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING
AT1G54440	Predicted Affinity Capture-Western Synthetic Lethality	FSW = 0.0638	Unknown	3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT3G06910	Predicted interologs mapping Co-expression	FSW = 0.0190	Unknown	ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G02530 - ( RNA and export factor-binding protein putative )

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown