Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79280 - ( NUA (NUCLEAR PORE ANCHOR) )
17 Proteins interacs with AT1G79280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G15880 | Experimentaltwo hybrid | FSW = 0.0395
| Class A:nucleusClass B:plastidClass D:nucleus (p = 0.78) | ESD4 (EARLY IN SHORT DAYS 4) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE |
AT2G41310 | Experimental | FSW = 0.0462
| Class D:nucleus (p = 0.78) | ATRR3 (RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0128
| Class C:nucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G54610 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0075
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.0489
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G37720 | PredictedSynthetic RescueAffinity Capture-MSAffinity Capture-Western | FSW = 0.0548
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G09860 | PredictedSynthetic Rescue | FSW = 0.1011
| Class C:nucleus | NUCLEAR MATRIX PROTEIN-RELATED |
AT2G41620 | PredictedAffinity Capture-Western | FSW = 0.0471
| Class C:nucleus | NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G53110 | Predictedsynthetic growth defect | FSW = 0.0831
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT1G10390 | PredictedAffinity Capture-Westernin vivo | FSW = 0.0320
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT1G03140 | PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | SPLICING FACTOR PRP18 FAMILY PROTEIN |
AT3G54380 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0600
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G06910 | Predictedinterologs mapping | FSW = 0.1003
| Unknown | ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE |
AT5G02530 | PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.0372
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G40490 | PredictedAffinity Capture-Western | FSW = 0.0312
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G54440 | PredictedPhenotypic Enhancement | FSW = 0.1538
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454