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AT5G37720 - ( RNA and export factor-binding protein putative )

135 Proteins interacs with AT5G37720

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.0314	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.0293	Class C: nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G33730	Predicted Affinity Capture-MS	FSW = 0.0105	Class C: nucleus	DEAD BOX RNA HELICASE PUTATIVE
AT1G14850	Predicted Affinity Capture-MS	FSW = 0.0123	Class C: nucleus	NUP155 NUCLEOCYTOPLASMIC TRANSPORTER
AT5G36790	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.0241	Class C: nucleus	PHOSPHOGLYCOLATE PHOSPHATASE PUTATIVE
AT1G79280	Predicted Synthetic Rescue Affinity Capture-MS Affinity Capture-Western	FSW = 0.0548	Class C: nucleus	NUA (NUCLEAR PORE ANCHOR)
AT1G02140	Predicted in vitro	FSW = 0.0145	Class C: nucleus	MAGO (MAGO NASHI) PROTEIN BINDING
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.0637	Class C: nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.0207	Class C: nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT3G11964	Predicted Affinity Capture-MS	FSW = 0.1008	Class C: nucleus	RNA BINDING
AT3G17390	Predicted Affinity Capture-MS	FSW = 0.0102	Class C: nucleus	MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT2G45490	Predicted Affinity Capture-MS	FSW = 0.0188	Class C: nucleus	ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT5G57015	Predicted Affinity Capture-MS	FSW = 0.0173	Class C: nucleus	CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G79020	Predicted Affinity Capture-MS	FSW = 0.0065	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT3G58660	Predicted Affinity Capture-MS	FSW = 0.0832	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT2G41500	Predicted Affinity Capture-MS	FSW = 0.0351	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT5G35910	Predicted Synthetic Lethality Affinity Capture-Western	FSW = 0.0674	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT5G09860	Predicted in vitro	FSW = 0.0475	Class C: nucleus	NUCLEAR MATRIX PROTEIN-RELATED
AT1G03190	Predicted Affinity Capture-MS	FSW = 0.0254	Class C: nucleus	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.0533	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0677	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT5G44200	Predicted Affinity Capture-MS	FSW = 0.0264	Class C: nucleus	CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.0834	Class C: nucleus	RNA HELICASE PUTATIVE
AT2G37990	Predicted Affinity Capture-MS	FSW = 0.1162	Class C: nucleus	RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT4G25340	Predicted Affinity Capture-MS	FSW = 0.0317	Class C: nucleus	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT2G34720	Predicted Affinity Capture-MS	FSW = 0.0361	Class C: nucleus	NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT4G08350	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0493	Class C: nucleus	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT1G03330	Predicted Affinity Capture-MS	FSW = 0.0114	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT3G60500	Predicted Affinity Capture-Western Synthetic Lethality	FSW = 0.0490	Class C: nucleus	CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING
AT4G22380	Predicted Affinity Capture-MS	FSW = 0.0423	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT1G78900	Predicted Affinity Capture-MS	FSW = 0.0104	Unknown	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G09590	Predicted Affinity Capture-MS	FSW = 0.0116	Unknown	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT2G21410	Predicted Affinity Capture-MS	FSW = 0.0092	Unknown	VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT3G12580	Predicted Affinity Capture-MS	FSW = 0.0072	Unknown	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G21580	Predicted Affinity Capture-MS	FSW = 0.0338	Unknown	40S RIBOSOMAL PROTEIN S25 (RPS25B)
AT2G01690	Predicted Affinity Capture-MS	FSW = 0.0107	Unknown	BINDING
AT3G22845	Predicted Affinity Capture-MS	FSW = 0.0124	Unknown	EMP24/GP25L/P24 PROTEIN-RELATED
AT5G64050	Predicted Affinity Capture-MS	FSW = 0.0077	Unknown	ERS (GLUTAMATE TRNA SYNTHETASE) GLUTAMATE-TRNA LIGASE
AT3G66658	Predicted Affinity Capture-MS	FSW = 0.0113	Unknown	ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G23010	Predicted Affinity Capture-MS	FSW = 0.0218	Unknown	MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE
AT1G64190	Predicted Synthetic Lethality	FSW = 0.0018	Unknown	6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT3G06530	Predicted Affinity Capture-MS	FSW = 0.0505	Unknown	BINDING
AT5G17770	Predicted Affinity Capture-MS	FSW = 0.0032	Unknown	ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE
AT4G29810	Predicted Affinity Capture-MS	FSW = 0.0139	Unknown	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE
AT5G15680	Predicted Affinity Capture-MS	FSW = 0.0076	Unknown	BINDING
AT4G26110	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0412	Unknown	NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT3G53110	Predicted Affinity Capture-MS	FSW = 0.0361	Unknown	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT1G70320	Predicted Affinity Capture-MS	FSW = 0.0199	Unknown	UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE
AT5G02050	Predicted Affinity Capture-MS	FSW = 0.0177	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT2G19980	Predicted Affinity Capture-MS	FSW = 0.0104	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G39630	Predicted Affinity Capture-MS	FSW = 0.0063	Unknown	GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN
AT1G67730	Predicted Affinity Capture-MS	FSW = 0.0046	Unknown	YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT5G66020	Predicted Affinity Capture-MS	FSW = 0.0171	Unknown	ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT5G41150	Predicted Affinity Capture-MS	FSW = 0.0056	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT3G23890	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0184	Unknown	TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT2G42120	Predicted Affinity Capture-Western	FSW = 0.0063	Unknown	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT4G15900	Predicted Affinity Capture-MS	FSW = 0.0089	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G51660	Predicted Affinity Capture-MS	FSW = 0.0177	Unknown	CPSF160 NUCLEIC ACID BINDING
AT5G11200	Predicted Affinity Capture-MS Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Reconstituted Complex Reconstituted Complex interologs mapping Affinity Capture-MS	FSW = 0.0413	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G33980	Predicted in vivo	FSW = 0.0072	Unknown	SMG-4/UPF3 FAMILY PROTEIN
AT5G56130	Predicted in vitro	FSW = 0.0165	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G16350	Predicted Affinity Capture-MS	FSW = 0.0372	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G24706	Predicted Affinity Capture-MS Synthetic Lethality Affinity Capture-MS Affinity Capture-Western	FSW = 0.0118	Unknown	UNKNOWN PROTEIN
AT1G49760	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1188	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G55150	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0245	Unknown	DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT1G80510	Predicted Affinity Capture-MS	FSW = 0.0142	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT2G27200	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0343	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G32600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0334	Unknown	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT3G06910	Predicted interologs mapping	FSW = 0.0158	Unknown	ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.0343	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0349	Unknown	KRR1 FAMILY PROTEIN
AT3G54380	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0484	Unknown	SAC3/GANP FAMILY PROTEIN
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.0514	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G60240	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0333	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G03430	Predicted Affinity Capture-MS	FSW = 0.0200	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G04210	Predicted Affinity Capture-MS	FSW = 0.0173	Unknown	PUX4 PROTEIN BINDING
AT4G27640	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0219	Unknown	IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT5G19820	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex	FSW = 0.0126	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G03020	Predicted Synthetic Rescue synthetic growth defect	FSW = 0.0053	Unknown	GLUTAREDOXIN FAMILY PROTEIN
AT1G04950	Predicted Affinity Capture-MS	FSW = 0.0240	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G06720	Predicted Affinity Capture-MS	FSW = 0.0323	Unknown	INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G07170	Predicted Affinity Capture-MS	FSW = 0.0144	Unknown	LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK)
AT1G13160	Predicted Affinity Capture-MS	FSW = 0.0245	Unknown	SDA1 FAMILY PROTEIN
AT1G14620	Predicted Affinity Capture-MS	FSW = 0.0055	Unknown	DECOY (DECOY)
AT1G15420	Predicted Affinity Capture-MS	FSW = 0.0086	Unknown	UNKNOWN PROTEIN
AT1G17720	Predicted Affinity Capture-MS	FSW = 0.0051	Unknown	ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G21570	Predicted Affinity Capture-MS	FSW = 0.0417	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G42440	Predicted Affinity Capture-MS	FSW = 0.0339	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G43860	Predicted Affinity Capture-MS	FSW = 0.0113	Unknown	TRANSCRIPTION FACTOR
AT1G48760	Predicted Affinity Capture-MS	FSW = 0.0056	Unknown	DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G51710	Predicted Affinity Capture-MS	FSW = 0.0304	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54390	Predicted Affinity Capture-MS	FSW = 0.0196	Unknown	PHD FINGER PROTEIN-RELATED
AT1G57620	Predicted Affinity Capture-MS	FSW = 0.0124	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.0537	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G59890	Predicted Affinity Capture-MS	FSW = 0.0298	Unknown	SNL5 (SIN3-LIKE 5)
AT1G60200	Predicted Affinity Capture-MS	FSW = 0.0288	Unknown	SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G61040	Predicted Affinity Capture-MS	FSW = 0.0240	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G64600	Predicted Affinity Capture-MS	FSW = 0.0245	Unknown	COPPER ION BINDING / METHYLTRANSFERASE
AT1G67190	Predicted Affinity Capture-MS Affinity Capture-Western Synthetic Lethality	FSW = 0.0624	Unknown	F-BOX FAMILY PROTEIN
AT1G68650	Predicted Affinity Capture-MS	FSW = 0.0507	Unknown	UNKNOWN PROTEIN
AT1G75660	Predicted Affinity Capture-MS	FSW = 0.0152	Unknown	XRN3 5-3 EXORIBONUCLEASE
AT1G79150	Predicted Affinity Capture-MS	FSW = 0.0531	Unknown	BINDING
AT1G80410	Predicted Affinity Capture-MS	FSW = 0.0191	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G16710	Predicted Affinity Capture-MS	FSW = 0.0046	Unknown	HESB-LIKE DOMAIN-CONTAINING PROTEIN
AT2G17380	Predicted Affinity Capture-MS	FSW = 0.0050	Unknown	AP19 PROTEIN BINDING / PROTEIN TRANSPORTER
AT2G18220	Predicted Affinity Capture-MS	FSW = 0.0521	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G19560	Predicted Affinity Capture-MS	FSW = 0.0113	Unknown	EER5 (ENHANCED ETHYLENE RESPONSE 5)
AT2G22400	Predicted Affinity Capture-MS	FSW = 0.0350	Unknown	NOL1/NOP2/SUN FAMILY PROTEIN
AT2G28360	Predicted Affinity Capture-MS	FSW = 0.0298	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT2G39340	Predicted Affinity Capture-MS	FSW = 0.0241	Unknown	SAC3/GANP FAMILY PROTEIN
AT2G40700	Predicted Affinity Capture-MS	FSW = 0.0415	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH17)
AT2G44150	Predicted Affinity Capture-MS	FSW = 0.0225	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G01160	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0339	Unknown	UNKNOWN PROTEIN
AT3G46960	Predicted Affinity Capture-MS	FSW = 0.0305	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G49470	Predicted Affinity Capture-MS	FSW = 0.0308	Unknown	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)
AT3G59410	Predicted Affinity Capture-MS	FSW = 0.0185	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G04950	Predicted Affinity Capture-MS	FSW = 0.0060	Unknown	THIOREDOXIN FAMILY PROTEIN
AT4G12620	Predicted Affinity Capture-MS	FSW = 0.0218	Unknown	ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G21660	Predicted Affinity Capture-MS	FSW = 0.0291	Unknown	PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT4G22540	Predicted Affinity Capture-MS	FSW = 0.0068	Unknown	ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING
AT4G25970	Predicted Affinity Capture-MS	FSW = 0.0097	Unknown	PSD3 (PHOSPHATIDYLSERINE DECARBOXYLASE 3) PHOSPHATIDYLSERINE DECARBOXYLASE
AT4G28200	Predicted Affinity Capture-MS	FSW = 0.0181	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G30870	Predicted Affinity Capture-MS	FSW = 0.0366	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G13480	Predicted Affinity Capture-MS	FSW = 0.0158	Unknown	FY PROTEIN BINDING
AT5G13780	Predicted Affinity Capture-MS	FSW = 0.0275	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G14530	Predicted Affinity Capture-MS	FSW = 0.0259	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G14600	Predicted Affinity Capture-MS	FSW = 0.0216	Unknown	TRNA (ADENINE-N1-)-METHYLTRANSFERASE
AT5G24840	Predicted Affinity Capture-MS	FSW = 0.0112	Unknown	TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G27990	Predicted Affinity Capture-MS	FSW = 0.0173	Unknown	UNKNOWN PROTEIN
AT5G41880	Predicted Affinity Capture-MS	FSW = 0.0378	Unknown	POLA3 DNA PRIMASE
AT5G51120	Predicted Affinity Capture-MS	FSW = 0.0245	Unknown	PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING
AT5G53770	Predicted Affinity Capture-MS	FSW = 0.0507	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G56740	Predicted Affinity Capture-MS	FSW = 0.0095	Unknown	HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT5G61770	Predicted Affinity Capture-MS	FSW = 0.0428	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT5G46840	Predicted Affinity Capture-MS	FSW = 0.0949	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G37720 - ( RNA and export factor-binding protein putative )

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