Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G51660 - ( CPSF160 nucleic acid binding )
34 Proteins interacs with AT5G51660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23880 | Experimentaltwo hybridtwo hybridReconstituted ComplexAffinity Capture-MSAffinity Capture-Westernaffinity technologyin vitro | FSW = 0.5489
| Class D:cytosol (p = 0.67) | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT1G30460 | Experimentaltwo hybridtwo hybrid | FSW = 0.1458
| Unknown | CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT3G04680 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.2778
| Unknown | CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING |
AT1G61010 | ExperimentalAffinity Capture-Western | FSW = 0.5225
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT2G01730 | ExperimentalAffinity Capture-Western | FSW = 0.1214
| Unknown | ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II) CATALYTIC/ PROTEIN BINDING |
AT5G13480 | ExperimentalAffinity Capture-Western | FSW = 0.3217
| Unknown | FY PROTEIN BINDING |
AT1G18540 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0352
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G73820 | PredictedAffinity Capture-MS | FSW = 0.3644
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT4G35800 | Predictedtwo hybridtwo hybridReconstituted Complexinteraction prediction | FSW = 0.0573
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0013
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G02680 | Predictedin vitroCo-expression | FSW = 0.0458
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT1G17680 | PredictedReconstituted Complex | FSW = 0.2126
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G17980 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.4042
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT1G44900 | Predictedin vitroCo-expression | FSW = 0.0090
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G25150 | Predictedin vitro | FSW = 0.0837
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0057
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G20000 | Predictedin vitro | FSW = 0.1923
| Unknown | TAF11B (TBP-ASSOCIATED FACTOR 11B) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G55300 | Predictedin vitro | FSW = 0.0251
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT3G10070 | Predictedin vitro | FSW = 0.0491
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT4G20280 | Predictedin vitro | FSW = 0.0747
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G17760 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3650
| Unknown | CSTF77 PROTEIN BINDING |
AT1G21570 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4040
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G22480 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0105
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT2G39840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemicalinteraction prediction | FSW = 0.0983
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G04885 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3130
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT5G14530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3529
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G47430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5148
| Unknown | ZINC ION BINDING |
AT1G73960 | PredictedAffinity Capture-MS | FSW = 0.2778
| Unknown | TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING |
AT2G29400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.1315
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G17410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4856
| Unknown | ZINC ION BINDING |
AT1G73840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4694
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
AT1G66500 | PredictedAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.4142
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454