Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G29400 - ( TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) protein serine/threonine phosphatase )
68 Proteins interacs with AT2G29400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G52140 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT3G04840 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT1G73820 | PredictedAffinity Capture-MS | FSW = 0.1100
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT2G35040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0438
| Unknown | AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN |
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.0624
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G29320 | PredictedAffinity Capture-MS | FSW = 0.0438
| Unknown | GLUCAN PHOSPHORYLASE PUTATIVE |
AT1G35160 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G20920 | PredictedAffinity Capture-MS | FSW = 0.0266
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT1G06400 | Predictedtwo hybrid | FSW = 0.0038
| Unknown | ARA-2 GTP BINDING |
AT1G59830 | PredictedPhylogenetic profile method | FSW = 0.1963
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G40360 | PredictedAffinity Capture-MS | FSW = 0.0624
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G25880 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0450
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G26720 | PredictedPhylogenetic profile method | FSW = 0.0211
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G57660 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT5G54910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0840
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G01770 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | ATBET10 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10) DNA BINDING |
AT1G17980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1616
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT5G15550 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G64040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2420
| Unknown | TOPP3 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15870 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT1G53240 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
AT5G23880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1580
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT5G51660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.1315
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT2G21790 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT5G13480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1016
| Unknown | FY PROTEIN BINDING |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G07070 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AA) |
AT2G40010 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0083
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT5G19680 | Predictedinterologs mappinginterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0386
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G16800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0217
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
AT5G14530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1226
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G61010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.1293
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT4G17410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1947
| Unknown | ZINC ION BINDING |
AT1G73840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.2161
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
AT2G31305 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybrid | FSW = 0.0729
| Unknown | INH3 (INHIBITOR-3) |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT5G52200 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSSynthetic LethalitySynthetic Rescuetwo hybrid | FSW = 0.0282
| Unknown | UNKNOWN PROTEIN |
AT3G19420 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT5G14520 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | PESCADILLO-RELATED |
AT3G12340 | PredictedAffinity Capture-MSAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.0614
| Unknown | FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT1G11240 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0625
| Unknown | UNKNOWN PROTEIN |
AT4G25730 | PredictedAffinity Capture-MS | FSW = 0.0330
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT5G40490 | PredictedAffinity Capture-Western | FSW = 0.0042
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G09000 | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
AT2G18290 | PredictedSynthetic Lethality | FSW = 0.0225
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT4G04210 | PredictedSynthetic Rescue | FSW = 0.0115
| Unknown | PUX4 PROTEIN BINDING |
AT3G59410 | PredictedSynthetic Rescue | FSW = 0.0133
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G45630 | PredictedSynthetic Rescue | FSW = 0.0074
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G32610 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G58830 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT1G50030 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT4G11240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2161
| Unknown | TOPP7 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G39840 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4895
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G27840 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2540
| Unknown | TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G43380 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1947
| Unknown | TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G59160 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1524
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G46820 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2301
| Unknown | TOPP5 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G05580 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2735
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G55260 | PredictedPhylogenetic profile method | FSW = 0.0875
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G32990 | PredictedGene fusion method | FSW = 0.0548
| Unknown | NUCLEOTIDE BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454