Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G52200 - ( unknown protein )
61 Proteins interacs with AT5G52200Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G44120 | PredictedPhenotypic Enhancement | FSW = 0.0278
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7C) |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.1903
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1072
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT2G37270 | Predictedbiochemicalinterologs mappingSynthetic RescuePhenotypic Suppressioninterologs mapping | FSW = 0.0250
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G26590 | Predictedbiochemical | FSW = 0.0222
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0454
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G20800 | PredictedPhenotypic Enhancement | FSW = 0.1543
| Unknown | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT5G01410 | PredictedSynthetic Lethality | FSW = 0.0975
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.1067
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT4G35090 | PredictedPhenotypic Enhancement | FSW = 0.2986
| Unknown | CAT2 (CATALASE 2) CATALASE |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.2355
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G55400 | Predictedbiochemical | FSW = 0.1086
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.0204
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G03650 | PredictedSynthetic Lethality | FSW = 0.0392
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT3G13560 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0216
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G34580 | Predictedinterologs mapping | FSW = 0.0064
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0091
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G19930 | PredictedPhenotypic Enhancement | FSW = 0.3125
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G26340 | PredictedSynthetic Lethality | FSW = 0.1374
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G69850 | PredictedPhenotypic Enhancement | FSW = 0.0988
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT3G16180 | PredictedSynthetic Lethality | FSW = 0.0071
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G39480 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2964
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G25880 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0334
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
AT2G45490 | Predictedinterologs mappinginterologs mappingSynthetic Rescue | FSW = 0.0186
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT2G34450 | PredictedPhenotypic EnhancementSynthetic LethalitySynthetic Lethality | FSW = 0.4034
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0450
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G01210 | PredictedPhenotypic Enhancement | FSW = 0.1306
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.1135
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT2G15430 | PredictedSynthetic Lethality | FSW = 0.0913
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G73690 | PredictedSynthetic Lethality | FSW = 0.0789
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G29800 | PredictedPhenotypic EnhancementSynthetic LethalitySynthetic Lethality | FSW = 0.3147
| Unknown | AAA-TYPE ATPASE FAMILY |
AT1G79230 | PredictedSynthetic Lethality | FSW = 0.0554
| Unknown | MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) 3-MERCAPTOPYRUVATE SULFURTRANSFERASE/ SULFURTRANSFERASE/ THIOSULFATE SULFURTRANSFERASE |
AT1G29330 | PredictedPhenotypic EnhancementSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2566
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT5G28060 | PredictedPhenotypic Enhancement | FSW = 0.1948
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT4G39100 | PredictedPhenotypic Enhancement | FSW = 0.2063
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT5G47790 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0933
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
AT5G59160 | PredictedPhenotypic SuppressionPhenotypic Suppressiontwo hybridAffinity Capture-MSin vitro | FSW = 0.0392
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G28290 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0179
| Unknown | ATNEK3 (NIMA-RELATED KINASE3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G39840 | PredictedPhenotypic SuppressionSynthetic RescueAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridSynthetic LethalitySynthetic Rescueinteraction prediction | FSW = 0.0352
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.1838
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G33040 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0183
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.3073
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G71530 | PredictedPhenotypic Enhancement | FSW = 0.0546
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G76920 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1604
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G27340 | PredictedPhenotypic Enhancement | FSW = 0.2121
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.2567
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT3G09800 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3252
| Unknown | PROTEIN BINDING |
AT3G13330 | Predictedbiochemicalinterologs mapping | FSW = 0.0424
| Unknown | BINDING |
AT3G29060 | PredictedPhenotypic Enhancement | FSW = 0.2399
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK) |
AT3G53650 | PredictedPhenotypic Enhancement | FSW = 0.1701
| Unknown | HISTONE H2B PUTATIVE |
AT4G24040 | PredictedPhenotypic Enhancement | FSW = 0.2661
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT4G33950 | PredictedPhenotypic Enhancement | FSW = 0.3421
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT1G55810 | PredictedSynthetic Lethality | FSW = 0.0712
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G73810 | PredictedSynthetic Rescue | FSW = 0.0878
| Unknown | UNKNOWN PROTEIN |
AT2G44740 | PredictedSynthetic Lethality | FSW = 0.0426
| Unknown | CYCP41 (CYCLIN P41) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.2613
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
AT5G57270 | PredictedPhenotypic Enhancement | FSW = 0.0829
| Unknown | UNKNOWN PROTEIN |
AT5G61650 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0325
| Unknown | CYCP42 (CYCLIN P42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G65690 | PredictedPhenotypic Enhancement | FSW = 0.2922
| Unknown | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT2G29400 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSSynthetic LethalitySynthetic Rescuetwo hybrid | FSW = 0.0282
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G11240 | PredictedPhenotypic Suppressiontwo hybrid | FSW = 0.0921
| Unknown | TOPP7 PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454