Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G52200 - ( unknown protein )

61 Proteins interacs with AT5G52200
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G44120

Predicted

Phenotypic Enhancement

FSW = 0.0278

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7C)
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.1903

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1072

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT2G37270

Predicted

biochemical

interologs mapping

Synthetic Rescue

Phenotypic Suppression

interologs mapping

FSW = 0.0250

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G26590

Predicted

biochemical

FSW = 0.0222

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0454

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G20800

Predicted

Phenotypic Enhancement

FSW = 0.1543

Unknown

NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE
AT5G01410

Predicted

Synthetic Lethality

FSW = 0.0975

Unknown

RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT1G16030

Predicted

Phenotypic Enhancement

FSW = 0.1067

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT4G35090

Predicted

Phenotypic Enhancement

FSW = 0.2986

Unknown

CAT2 (CATALASE 2) CATALASE
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.2355

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT3G55400

Predicted

biochemical

FSW = 0.1086

Unknown

OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT5G51820

Predicted

Phenotypic Suppression

FSW = 0.0204

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT5G03650

Predicted

Synthetic Lethality

FSW = 0.0392

Unknown

SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT3G13560

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0216

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT4G34580

Predicted

interologs mapping

FSW = 0.0064

Unknown

COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G52640

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0091

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G19930

Predicted

Phenotypic Enhancement

FSW = 0.3125

Unknown

STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT5G26340

Predicted

Synthetic Lethality

FSW = 0.1374

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G69850

Predicted

Phenotypic Enhancement

FSW = 0.0988

Unknown

ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT3G16180

Predicted

Synthetic Lethality

FSW = 0.0071

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G39480

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2964

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G25880

Predicted

interologs mapping

Synthetic Rescue

FSW = 0.0334

Unknown

ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE
AT2G45490

Predicted

interologs mapping

interologs mapping

Synthetic Rescue

FSW = 0.0186

Unknown

ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT2G34450

Predicted

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

FSW = 0.4034

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G13445

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0450

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G01210

Predicted

Phenotypic Enhancement

FSW = 0.1306

Unknown

DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.1135

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT2G15430

Predicted

Synthetic Lethality

FSW = 0.0913

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G73690

Predicted

Synthetic Lethality

FSW = 0.0789

Unknown

CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G29800

Predicted

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

FSW = 0.3147

Unknown

AAA-TYPE ATPASE FAMILY
AT1G79230

Predicted

Synthetic Lethality

FSW = 0.0554

Unknown

MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) 3-MERCAPTOPYRUVATE SULFURTRANSFERASE/ SULFURTRANSFERASE/ THIOSULFATE SULFURTRANSFERASE
AT1G29330

Predicted

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.2566

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT5G28060

Predicted

Phenotypic Enhancement

FSW = 0.1948

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G39100

Predicted

Phenotypic Enhancement

FSW = 0.2063

Unknown

SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT5G47790

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0933

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT5G59160

Predicted

Phenotypic Suppression

Phenotypic Suppression

two hybrid

Affinity Capture-MS

in vitro

FSW = 0.0392

Unknown

TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G28290

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0179

Unknown

ATNEK3 (NIMA-RELATED KINASE3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G39840

Predicted

Phenotypic Suppression

Synthetic Rescue

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Synthetic Lethality

Synthetic Rescue

interaction prediction

FSW = 0.0352

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G18830Predicted

Phenotypic Enhancement

FSW = 0.1838

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G33040

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0183

Unknown

NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT1G61670

Predicted

Phenotypic Enhancement

FSW = 0.3073

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT1G71530

Predicted

Phenotypic Enhancement

FSW = 0.0546

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G76920

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1604

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.2121

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.2567

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT3G09800

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3252

Unknown

PROTEIN BINDING
AT3G13330Predicted

biochemical

interologs mapping

FSW = 0.0424

Unknown

BINDING
AT3G29060

Predicted

Phenotypic Enhancement

FSW = 0.2399

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK)
AT3G53650

Predicted

Phenotypic Enhancement

FSW = 0.1701

Unknown

HISTONE H2B PUTATIVE
AT4G24040

Predicted

Phenotypic Enhancement

FSW = 0.2661

Unknown

TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.3421

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT1G55810

Predicted

Synthetic Lethality

FSW = 0.0712

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G73810

Predicted

Synthetic Rescue

FSW = 0.0878

Unknown

UNKNOWN PROTEIN
AT2G44740

Predicted

Synthetic Lethality

FSW = 0.0426

Unknown

CYCP41 (CYCLIN P41) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G53120

Predicted

Phenotypic Enhancement

FSW = 0.2613

Unknown

SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE
AT5G57270

Predicted

Phenotypic Enhancement

FSW = 0.0829

Unknown

UNKNOWN PROTEIN
AT5G61650

Predicted

Synthetic Lethality

two hybrid

FSW = 0.0325

Unknown

CYCP42 (CYCLIN P42) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G65690

Predicted

Phenotypic Enhancement

FSW = 0.2922

Unknown

PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING
AT2G29400

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Synthetic Rescue

two hybrid

FSW = 0.0282

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G11240

Predicted

Phenotypic Suppression

two hybrid

FSW = 0.0921

Unknown

TOPP7 PROTEIN SERINE/THREONINE PHOSPHATASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454