Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G55810 - ( uracil phosphoribosyltransferase putative / UMP pyrophosphorylase putative / UPRTase putative )
67 Proteins interacs with AT1G55810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G21720 | Predictedinterologs mapping | FSW = 0.0423
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G47520 | PredictedSynthetic Lethality | FSW = 0.0769
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G33140 | Predictedtwo hybridtwo hybridSynthetic Lethality | FSW = 0.0311
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G66680 | PredictedSynthetic Lethality | FSW = 0.0189
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G08710 | PredictedPhenotypic Enhancement | FSW = 0.0199
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT4G36750 | Predictedtwo hybrid | FSW = 0.0602
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT4G09720 | PredictedSynthetic Lethality | FSW = 0.0432
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT3G26590 | Predictedinterologs mapping | FSW = 0.0365
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G74560 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0387
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT5G01410 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Rescueinterologs mapping | FSW = 0.1749
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT1G16030 | PredictedSynthetic Lethality | FSW = 0.0790
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT3G57050 | PredictedSynthetic Lethality | FSW = 0.0766
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT5G17990 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.0596
| Unknown | TRP1 (TRYPTOPHAN BIOSYNTHESIS 1) ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
AT5G03650 | PredictedSynthetic Lethality | FSW = 0.1038
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | DNA HELICASE-RELATED |
AT5G63980 | Predictedinterologs mapping | FSW = 0.0181
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT2G36880 | Predictedinterologs mapping | FSW = 0.0247
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | PYRUVATE KINASE PUTATIVE |
AT4G36640 | Predictedtwo hybrid | FSW = 0.0363
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G58800 | Predictedtwo hybrid | FSW = 0.0499
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G53870 | Predictedsynthetic growth defect | FSW = 0.0037
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G13980 | Predictedinterologs mapping | FSW = 0.0342
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G15430 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G53530 | PredictedSynthetic Lethality | FSW = 0.1166
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0193
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT2G17270 | Predictedinterologs mappingSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0702
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G29330 | Predictedtwo hybridbiochemicalReconstituted ComplexAffinity Capture-Western | FSW = 0.0959
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT5G66590 | Predictedsynthetic growth defect | FSW = 0.0207
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G01020 | PredictedCo-purification | FSW = 0.0611
| Unknown | ARV1 |
AT3G02580 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT5G40760 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT5G63960 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0927
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G59720 | PredictedSynthetic Lethality | FSW = 0.1005
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT1G08630 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | THA1 (THREONINE ALDOLASE 1) ALDEHYDE-LYASE/ THREONINE ALDOLASE |
AT1G12070 | Predictedinterologs mapping | FSW = 0.0806
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT1G34340 | Predictedtwo hybridSynthetic LethalitySynthetic Lethalitytwo hybridbiochemicalSynthetic LethalityAffinity Capture-MSReconstituted Complexinterologs mappinginterologs mapping | FSW = 0.2278
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G34760 | Predictedinterologs mapping | FSW = 0.0195
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G49520 | PredictedSynthetic Lethality | FSW = 0.1783
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G02730 | Predictedtwo hybrid | FSW = 0.0045
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G20870 | PredictedPhenotypic Enhancement | FSW = 0.0296
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.0314
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53030 | PredictedSynthetic Lethality | FSW = 0.0405
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT5G24840 | PredictedReconstituted Complex | FSW = 0.0161
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G44740 | Predictedbiochemical | FSW = 0.0041
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT5G46410 | PredictedAffinity Capture-Western | FSW = 0.0444
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT1G59580 | Predictedtwo hybrid | FSW = 0.0207
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G21890 | PredictedSynthetic Lethality | FSW = 0.0910
| Unknown | CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G30650 | Predictedinterologs mapping | FSW = 0.1026
| Unknown | CATALYTIC |
AT3G43980 | Predictedinterologs mapping | FSW = 0.0527
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29A) |
AT4G19880 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0256
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT4G33950 | PredictedSynthetic Lethality | FSW = 0.1159
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G14070 | PredictedSynthetic Lethality | FSW = 0.0523
| Unknown | ROXY2 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT5G16980 | PredictedSynthetic Lethality | FSW = 0.0251
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G52200 | PredictedSynthetic Lethality | FSW = 0.0712
| Unknown | UNKNOWN PROTEIN |
AT5G64760 | PredictedSynthetic Lethality | FSW = 0.0136
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT3G19420 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT1G01910 | Predictedtwo hybrid | FSW = 0.0092
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT3G27440 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0363
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT3G27190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1370
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT5G40870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0761
| Unknown | ATUK/UPRT1 (URIDINE KINASE/URACIL PHOSPHORIBOSYLTRANSFERASE 1) ATP BINDING / KINASE/ URACIL PHOSPHORIBOSYLTRANSFERASE/ URIDINE KINASE |
AT4G26510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0867
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454