Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01910 - ( anion-transporting ATPase putative )

51 Proteins interacs with AT1G01910
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G67500

Predicted

Affinity Capture-MS

FSW = 0.0123

Unknown

VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT2G44610

Predicted

interaction prediction

FSW = 0.0587

Unknown

RAB6A GTP BINDING / PROTEIN BINDING
AT3G62290

Predicted

Phenotypic Enhancement

FSW = 0.0692

Unknown

ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT1G10630

Predicted

interologs mapping

FSW = 0.0653

Unknown

ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT1G31780

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1723

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G12240

Predicted

two hybrid

FSW = 0.0174

Unknown

ATBETAFRUCT4 BETA-FRUCTOFURANOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT1G55120

Predicted

interaction prediction

FSW = 0.0174

Unknown

ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / LEVANASE
AT1G58030

Predicted

Affinity Capture-MS

FSW = 0.0135

Unknown

CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER
AT5G26240

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.1079

Unknown

CLC-D (CHLORIDE CHANNEL D) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL
AT1G07420

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0107

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT3G10350

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0741

Unknown

ANION-TRANSPORTING ATPASE FAMILY PROTEIN
ATCG00160Predicted

two hybrid

FSW = 0.0057

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
AT5G23630

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0929

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1226

Unknown

SEC22 TRANSPORTER
AT1G07670

Predicted

Phenotypic Enhancement

FSW = 0.0833

Unknown

CALCIUM-TRANSPORTING ATPASE
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0253

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G08820

Predicted

interologs mapping

Phenotypic Suppression

FSW = 0.1574

Unknown

VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT2G26300

Predicted

Affinity Capture-Western

Reconstituted Complex

biochemical

two hybrid

interaction prediction

FSW = 0.0055

Unknown

GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT1G43700

Predicted

two hybrid

FSW = 0.0148

Unknown

VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G21090

Predicted

interaction prediction

FSW = 0.0356

Unknown

ADRENODOXIN-LIKE FERREDOXIN 1
AT4G05450

Predicted

two hybrid

FSW = 0.0392

Unknown

ADRENODOXIN-LIKE FERREDOXIN 2
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0698

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G03600

Predicted

two hybrid

interaction prediction

FSW = 0.0168

Unknown

RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G10130

Predicted

interologs mapping

FSW = 0.0645

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G05710

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1764

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G01020

Predicted

Phenotypic Enhancement

FSW = 0.0768

Unknown

ARV1
AT1G10550

Predicted

two hybrid

interaction prediction

FSW = 0.0180

Unknown

XTH33 HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE
AT3G23730

Predicted

two hybrid

FSW = 0.0367

Unknown

XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE
AT4G02570

Predicted

two hybrid

FSW = 0.0032

Unknown

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT4G39800

Predicted

two hybrid

interaction prediction

FSW = 0.0623

Unknown

MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) INOSITOL-3-PHOSPHATE SYNTHASE
AT2G22240

Predicted

two hybrid

FSW = 0.0623

Unknown

MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) BINDING / CATALYTIC/ INOSITOL-3-PHOSPHATE SYNTHASE
AT2G14045

Predicted

two hybrid

FSW = 0.0156

Unknown

UNKNOWN PROTEIN
AT2G27970

Predicted

two hybrid

FSW = 0.0183

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G63220

Predicted

two hybrid

FSW = 0.0180

Unknown

UNKNOWN PROTEIN
AT1G05785

Predicted

Phenotypic Enhancement

FSW = 0.0678

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G20575

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0637

Unknown

DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE
AT1G48760

Predicted

interologs mapping

Phenotypic Suppression

FSW = 0.1423

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G67680

Predicted

Phenotypic Enhancement

FSW = 0.0379

Unknown

7S RNA BINDING
AT1G79990

Predicted

Phenotypic Enhancement

FSW = 0.1212

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT3G12180

Predicted

Phenotypic Enhancement

FSW = 0.2475

Unknown

CORNICHON FAMILY PROTEIN
AT3G22480

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0116

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0608

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT4G10320

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0141

Unknown

ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE
AT4G17890

Predicted

Phenotypic Enhancement

FSW = 0.1235

Unknown

AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT3G03180

Predicted

interologs mapping

FSW = 0.0920

Unknown

GOT1-LIKE FAMILY PROTEIN
AT2G35210

Predicted

interologs mapping

FSW = 0.1376

Unknown

RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G67650

Predicted

interologs mapping

FSW = 0.0180

Unknown

7S RNA BINDING
AT1G52360

Predicted

interologs mapping

FSW = 0.1047

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G12340

Predicted

interologs mapping

FSW = 0.1875

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK)
AT1G55810

Predicted

two hybrid

FSW = 0.0092

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT4G38900

Predicted

interaction prediction

FSW = 0.0189

Unknown

BZIP PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454