Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01910 - ( anion-transporting ATPase putative )
51 Proteins interacs with AT1G01910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0587
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G62290 | PredictedPhenotypic Enhancement | FSW = 0.0692
| Unknown | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G10630 | Predictedinterologs mapping | FSW = 0.0653
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G31780 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1723
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G12240 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | ATBETAFRUCT4 BETA-FRUCTOFURANOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G55120 | Predictedinteraction prediction | FSW = 0.0174
| Unknown | ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / LEVANASE |
AT1G58030 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT5G26240 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1079
| Unknown | CLC-D (CHLORIDE CHANNEL D) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT1G07420 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0107
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT3G10350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0741
| Unknown | ANION-TRANSPORTING ATPASE FAMILY PROTEIN |
ATCG00160 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT5G23630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0929
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1226
| Unknown | SEC22 TRANSPORTER |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0833
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0253
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G08820 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.1574
| Unknown | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE |
AT2G26300 | PredictedAffinity Capture-WesternReconstituted Complexbiochemicaltwo hybridinteraction prediction | FSW = 0.0055
| Unknown | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT1G43700 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT4G21090 | Predictedinteraction prediction | FSW = 0.0356
| Unknown | ADRENODOXIN-LIKE FERREDOXIN 1 |
AT4G05450 | Predictedtwo hybrid | FSW = 0.0392
| Unknown | ADRENODOXIN-LIKE FERREDOXIN 2 |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0698
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT3G03600 | Predictedtwo hybridinteraction prediction | FSW = 0.0168
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0645
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G05710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1764
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.0768
| Unknown | ARV1 |
AT1G10550 | Predictedtwo hybridinteraction prediction | FSW = 0.0180
| Unknown | XTH33 HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT3G23730 | Predictedtwo hybrid | FSW = 0.0367
| Unknown | XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE |
AT4G02570 | Predictedtwo hybrid | FSW = 0.0032
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT4G39800 | Predictedtwo hybridinteraction prediction | FSW = 0.0623
| Unknown | MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) INOSITOL-3-PHOSPHATE SYNTHASE |
AT2G22240 | Predictedtwo hybrid | FSW = 0.0623
| Unknown | MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) BINDING / CATALYTIC/ INOSITOL-3-PHOSPHATE SYNTHASE |
AT2G14045 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | UNKNOWN PROTEIN |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G63220 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | UNKNOWN PROTEIN |
AT1G05785 | PredictedPhenotypic Enhancement | FSW = 0.0678
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G20575 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0637
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G48760 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.1423
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G67680 | PredictedPhenotypic Enhancement | FSW = 0.0379
| Unknown | 7S RNA BINDING |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.1212
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.2475
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G22480 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0116
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0608
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT4G10320 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0141
| Unknown | ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE |
AT4G17890 | PredictedPhenotypic Enhancement | FSW = 0.1235
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G03180 | Predictedinterologs mapping | FSW = 0.0920
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT2G35210 | Predictedinterologs mapping | FSW = 0.1376
| Unknown | RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G67650 | Predictedinterologs mapping | FSW = 0.0180
| Unknown | 7S RNA BINDING |
AT1G52360 | Predictedinterologs mapping | FSW = 0.1047
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G12340 | Predictedinterologs mapping | FSW = 0.1875
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G55810 | Predictedtwo hybrid | FSW = 0.0092
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G38900 | Predictedinteraction prediction | FSW = 0.0189
| Unknown | BZIP PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454