Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G39800 - ( MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) inositol-3-phosphate synthase )

6 Proteins interacs with AT4G39800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0245

Class D:

cytosol (p = 0.67)

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G07770

Predicted

interaction prediction

FSW = 0.0189

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G08820

Predicted

interologs mapping

FSW = 0.0945

Unknown

VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT2G22240

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.5074

Unknown

MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) BINDING / CATALYTIC/ INOSITOL-3-PHOSPHATE SYNTHASE
AT5G10170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1973

Unknown

MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3) BINDING / CATALYTIC/ INOSITOL-3-PHOSPHATE SYNTHASE
AT1G01910

Predicted

two hybrid

interaction prediction

FSW = 0.0623

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454