Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07420 - ( SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase )
57 Proteins interacs with AT1G07420Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G01620 | Predictedtwo hybrid | FSW = 0.0148
| Class C:plastid | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL |
AT1G01300 | PredictedPhenotypic Suppression | FSW = 0.0267
| Class C:plastid | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G66658 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0635
| Class C:plastid | ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G69740 | PredictedSynthetic Rescue | FSW = 0.0111
| Class C:plastid | HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE |
AT3G07680 | Predictedtwo hybridCo-expression | FSW = 0.0120
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT4G01320 | Predictedtwo hybridinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.0991
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT2G30710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0888
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G22845 | Predictedtwo hybridinteraction prediction | FSW = 0.0279
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT1G76490 | Predictedtwo hybridinteraction prediction | FSW = 0.1293
| Unknown | HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.0865
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT1G11680 | PredictedSynthetic Rescue | FSW = 0.1171
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT3G51460 | Predictedinterologs mapping | FSW = 0.1014
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT3G55360 | Predictedtwo hybridinteraction prediction | FSW = 0.1926
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT5G05670 | Predictedtwo hybrid | FSW = 0.1077
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT1G13210 | Predictedinterologs mapping | FSW = 0.0864
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT3G25540 | Predictedinteraction prediction | FSW = 0.0726
| Unknown | LAG1 |
AT4G25630 | PredictedSynthetic Lethality | FSW = 0.0032
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G29330 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0201
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT1G71270 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0570
| Unknown | POK (POKY POLLEN TUBE) |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.1179
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT3G05710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0914
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G67730 | Predictedtwo hybrid | FSW = 0.1096
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT2G39630 | Predictedtwo hybridinteraction prediction | FSW = 0.0369
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0590
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G02580 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0670
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT5G50720 | Predictedtwo hybrid | FSW = 0.0835
| Unknown | ATHVA22E |
AT1G69700 | Predictedtwo hybrid | FSW = 0.0722
| Unknown | ATHVA22C |
AT1G10030 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.1496
| Unknown | ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) |
AT4G24960 | Predictedinteraction prediction | FSW = 0.0850
| Unknown | ATHVA22D |
AT1G01910 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0107
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT3G55380 | PredictedPhenotypic Enhancement | FSW = 0.0511
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT4G34100 | PredictedPhenotypic Enhancement | FSW = 0.0516
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0321
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G16570 | Predictedtwo hybridinteraction prediction | FSW = 0.1307
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G47290 | Predictedinteraction predictiontwo hybrid | FSW = 0.0328
| Unknown | AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING) |
AT1G57600 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0961
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT2G02370 | Predictedtwo hybrid | FSW = 0.0340
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G124501) HAS 1745 BLAST HITS TO 1745 PROTEINS IN 446 SPECIES ARCHAE - 2 BACTERIA - 792 METAZOA - 108 FUNGI - 97 PLANTS - 119 VIRUSES - 0 OTHER EUKARYOTES - 627 (SOURCE NCBI BLINK) |
AT2G34980 | Predictedtwo hybridinteraction prediction | FSW = 0.2326
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G47830 | Predictedinterologs mapping | FSW = 0.0257
| Unknown | CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1) |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.1184
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G19940 | Predictedtwo hybridinteraction prediction | FSW = 0.0047
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G10310 | Predictedtwo hybridinteraction prediction | FSW = 0.0127
| Unknown | HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER |
AT4G22750 | Predictedtwo hybrid | FSW = 0.0373
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT4G37760 | Predictedtwo hybridinteraction prediction | FSW = 0.0543
| Unknown | SQE3 (SQUALENE EPOXIDASE 3) SQUALENE MONOOXYGENASE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0215
| Unknown | ORMDL FAMILY PROTEIN |
AT3G46460 | Predictedinterologs mapping | FSW = 0.0397
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT3G04080 | Predictedinterologs mapping | FSW = 0.1108
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT2G22425 | Predictedtwo hybrid | FSW = 0.1582
| Unknown | PEPTIDASE |
AT3G60800 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT1G12450 | Predictedtwo hybrid | FSW = 0.0164
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G228501) HAS 1233 BLAST HITS TO 1230 PROTEINS IN 347 SPECIES ARCHAE - 2 BACTERIA - 557 METAZOA - 104 FUNGI - 72 PLANTS - 132 VIRUSES - 0 OTHER EUKARYOTES - 366 (SOURCE NCBI BLINK) |
AT2G18770 | Predictedtwo hybridinteraction prediction | FSW = 0.1934
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT1G58440 | Predictedtwo hybrid | FSW = 0.0722
| Unknown | XF1 SQUALENE MONOOXYGENASE |
AT1G24470 | Predictedtwo hybrid | FSW = 0.1327
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G40042 | Predictedinteraction prediction | FSW = 0.2179
| Unknown | PEPTIDASE |
AT4G22753 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0573
| Unknown | SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ CATALYTIC |
AT4G22756 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0279
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT2G29390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0244
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454