Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07420 - ( SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase )

57 Proteins interacs with AT1G07420
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G01620

Predicted

two hybrid

FSW = 0.0148

Class C:

plastid

PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL
AT1G01300

Predicted

Phenotypic Suppression

FSW = 0.0267

Class C:

plastid

ASPARTYL PROTEASE FAMILY PROTEIN
AT3G66658

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0635

Class C:

plastid

ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G69740

Predicted

Synthetic Rescue

FSW = 0.0111

Class C:

plastid

HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE
AT3G07680

Predicted

two hybrid

Co-expression

FSW = 0.0120

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT4G01320

Predicted

two hybrid

interologs mapping

Phenotypic Enhancement

interaction prediction

FSW = 0.0991

Unknown

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT2G30710

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0888

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G22845

Predicted

two hybrid

interaction prediction

FSW = 0.0279

Unknown

EMP24/GP25L/P24 PROTEIN-RELATED
AT1G76490

Predicted

two hybrid

interaction prediction

FSW = 0.1293

Unknown

HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE
AT1G59820

Predicted

Phenotypic Enhancement

FSW = 0.0865

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT1G11680

Predicted

Synthetic Rescue

FSW = 0.1171

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT3G51460

Predicted

interologs mapping

FSW = 0.1014

Unknown

RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT3G55360

Predicted

two hybrid

interaction prediction

FSW = 0.1926

Unknown

CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT5G05670

Predicted

two hybrid

FSW = 0.1077

Unknown

SIGNAL RECOGNITION PARTICLE BINDING
AT1G13210

Predicted

interologs mapping

FSW = 0.0864

Unknown

ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT3G25540

Predicted

interaction prediction

FSW = 0.0726

Unknown

LAG1
AT4G25630

Predicted

Synthetic Lethality

FSW = 0.0032

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G29330

Predicted

two hybrid

interaction prediction

Co-expression

FSW = 0.0201

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT1G71270

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0570

Unknown

POK (POKY POLLEN TUBE)
AT5G18280

Predicted

Phenotypic Enhancement

FSW = 0.1179

Unknown

ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE
AT3G05710

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0914

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G67730

Predicted

two hybrid

FSW = 0.1096

Unknown

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT2G39630

Predicted

two hybrid

interaction prediction

FSW = 0.0369

Unknown

GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN
AT5G66020

Predicted

Phenotypic Enhancement

FSW = 0.0590

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G02580

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0670

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT5G50720

Predicted

two hybrid

FSW = 0.0835

Unknown

ATHVA22E
AT1G69700

Predicted

two hybrid

FSW = 0.0722

Unknown

ATHVA22C
AT1G10030

Predicted

Affinity Capture-Western

Affinity Capture-Western

two hybrid

interaction prediction

FSW = 0.1496

Unknown

ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28)
AT4G24960

Predicted

interaction prediction

FSW = 0.0850

Unknown

ATHVA22D
AT1G01910

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0107

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT3G55380

Predicted

Phenotypic Enhancement

FSW = 0.0511

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT4G34100

Predicted

Phenotypic Enhancement

FSW = 0.0516

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G13580

Predicted

two hybrid

FSW = 0.0321

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G16570

Predicted

two hybrid

interaction prediction

FSW = 0.1307

Unknown

GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN
AT1G47290

Predicted

interaction prediction

two hybrid

FSW = 0.0328

Unknown

AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING)
AT1G57600

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0961

Unknown

MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN
AT2G02370

Predicted

two hybrid

FSW = 0.0340

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G124501) HAS 1745 BLAST HITS TO 1745 PROTEINS IN 446 SPECIES ARCHAE - 2 BACTERIA - 792 METAZOA - 108 FUNGI - 97 PLANTS - 119 VIRUSES - 0 OTHER EUKARYOTES - 627 (SOURCE NCBI BLINK)
AT2G34980

Predicted

two hybrid

interaction prediction

FSW = 0.2326

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G47830

Predicted

interologs mapping

FSW = 0.0257

Unknown

CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1)
AT3G06460

Predicted

two hybrid

interaction prediction

FSW = 0.1184

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G19940

Predicted

two hybrid

interaction prediction

FSW = 0.0047

Unknown

SUGAR TRANSPORTER PUTATIVE
AT4G10310

Predicted

two hybrid

interaction prediction

FSW = 0.0127

Unknown

HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER
AT4G22750

Predicted

two hybrid

FSW = 0.0373

Unknown

ZINC FINGER (DHHC TYPE) FAMILY PROTEIN
AT4G37760

Predicted

two hybrid

interaction prediction

FSW = 0.0543

Unknown

SQE3 (SQUALENE EPOXIDASE 3) SQUALENE MONOOXYGENASE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0215

Unknown

ORMDL FAMILY PROTEIN
AT3G46460

Predicted

interologs mapping

FSW = 0.0397

Unknown

UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT3G04080

Predicted

interologs mapping

FSW = 0.1108

Unknown

ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE
AT2G22425

Predicted

two hybrid

FSW = 0.1582

Unknown

PEPTIDASE
AT3G60800

Predicted

two hybrid

FSW = 0.0345

Unknown

ZINC FINGER (DHHC TYPE) FAMILY PROTEIN
AT1G12450

Predicted

two hybrid

FSW = 0.0164

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G228501) HAS 1233 BLAST HITS TO 1230 PROTEINS IN 347 SPECIES ARCHAE - 2 BACTERIA - 557 METAZOA - 104 FUNGI - 72 PLANTS - 132 VIRUSES - 0 OTHER EUKARYOTES - 366 (SOURCE NCBI BLINK)
AT2G18770

Predicted

two hybrid

interaction prediction

FSW = 0.1934

Unknown

SIGNAL RECOGNITION PARTICLE BINDING
AT1G58440

Predicted

two hybrid

FSW = 0.0722

Unknown

XF1 SQUALENE MONOOXYGENASE
AT1G24470

Predicted

two hybrid

FSW = 0.1327

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G40042

Predicted

interaction prediction

FSW = 0.2179

Unknown

PEPTIDASE
AT4G22753

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0573

Unknown

SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ CATALYTIC
AT4G22756

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0279

Unknown

SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT2G29390

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0244

Unknown

SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454