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AT4G25630 - ( FIB2 (FIBRILLARIN 2) snoRNA binding )

178 Proteins interacs with AT4G25630

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G29510	Experimental	FSW = 0.0257	Class A: nucleus Class B: cytosol Class D: mitochondrion (p = 0.82)	PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT2G19670	Experimental	FSW = 0.0286	Class A: nucleus Class B: cytosol	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT5G16620	Experimental	FSW = 0.0123	Class B: plastid nucleus Class D: plastid (p = 0.78) nucleus (p = 0.78)	TIC40
AT3G21350	Experimental	FSW = 0.0037	Unknown	RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED
AT3G02090	Predicted Synthetic Lethality	FSW = 0.0023	Class C: nucleus	MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.1683	Class C: nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.1749	Class C: nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.2885	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G67430	Predicted Synthetic Lethality	FSW = 0.1656	Class C: nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.1542	Class C: nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G33730	Predicted Synthetic Lethality	FSW = 0.0080	Class C: nucleus	DEAD BOX RNA HELICASE PUTATIVE
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.2078	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT1G72370	Predicted Shared biological function Co-expression	FSW = 0.0455	Class C: nucleus	P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2812	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G03920	Predicted Affinity Capture-Western Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1665	Class C: nucleus	GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.1679	Class C: nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.2314	Class C: nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G11964	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.4314	Class C: nucleus	RNA BINDING
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.3252	Class C: nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37190	Predicted Affinity Capture-MS Co-expression	FSW = 0.1817	Class C: nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT2G44860	Predicted Affinity Capture-MS Co-expression	FSW = 0.0829	Class C: nucleus	60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.3069	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G26600	Predicted Affinity Capture-MS Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-MS Co-expression	FSW = 0.0840	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT1G75560	Predicted Affinity Capture-MS	FSW = 0.0121	Class C: nucleus	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT1G10300	Predicted Affinity Capture-MS	FSW = 0.0997	Class C: nucleus	GTP-BINDING PROTEIN-RELATED
AT2G24490	Predicted Synthetic Lethality Shared biological function Co-expression	FSW = 0.0055	Class C: nucleus	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G57660	Predicted Co-purification Co-expression	FSW = 0.0274	Class C: nucleus	NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT3G56990	Predicted Affinity Capture-MS	FSW = 0.2178	Class C: nucleus	EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT3G58660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2365	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT2G41500	Predicted Affinity Capture-MS Co-expression	FSW = 0.0625	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT3G55620	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1346	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G21540	Predicted Affinity Capture-MS	FSW = 0.1990	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G72440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2793	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G57150	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2918	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.2357	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT5G08180	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1717	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT1G03190	Predicted Synthetic Lethality	FSW = 0.0020	Class C: nucleus	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G16810	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2731	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT1G48920	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0903	Class C: nucleus	ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G48240	Predicted Affinity Capture-MS	FSW = 0.1160	Class C: nucleus	UNKNOWN PROTEIN
AT5G54910	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1247	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2305	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G05060	Predicted Synthetic Lethality Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid interologs mapping interaction prediction Enriched domain pair Co-expression	FSW = 0.3703	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860	Predicted two hybrid Synthetic Lethality Affinity Capture-Western Affinity Capture-MS two hybrid Affinity Capture-MS Affinity Capture-Western interologs mapping interaction prediction Enriched domain pair Co-expression	FSW = 0.4237	Class C: nucleus	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2771	Class C: nucleus	RNA HELICASE PUTATIVE
AT1G56110	Predicted Synthetic Lethality Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western two hybrid Enriched domain pair Co-expression	FSW = 0.1683	Class C: nucleus	NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT1G04510	Predicted Co-purification Co-expression	FSW = 0.0202	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G54350	Predicted co-fractionation Co-fractionation	FSW = 0.0222	Class C: nucleus	EMB1967 (EMBRYO DEFECTIVE 1967)
AT4G05410	Predicted Affinity Capture-Western Affinity Capture-MS two hybrid Co-expression	FSW = 0.2819	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G13370	Predicted Affinity Capture-MS	FSW = 0.0163	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G08350	Predicted Affinity Capture-MS	FSW = 0.0718	Class C: nucleus	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT5G66540	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3554	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT2G34210	Predicted Affinity Capture-MS	FSW = 0.0705	Class C: nucleus	STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT1G63780	Predicted Affinity Capture-Western Co-expression	FSW = 0.1265	Class C: nucleus	IMP4
AT2G20490	Predicted Affinity Capture-Western interaction prediction Co-expression	FSW = 0.0622	Class C: nucleus	NOP10 RNA BINDING
AT3G57000	Predicted Affinity Capture-MS	FSW = 0.2773	Class C: nucleus	NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.2911	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT5G52470	Predicted Shared biological function Co-expression	FSW = 0.0910	Class C: nucleus	FIB1 (FIBRILLARIN 1) SNORNA BINDING
AT1G63810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.3297	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT4G22380	Predicted two hybrid two hybrid	FSW = 0.1265	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G18040	Predicted Affinity Capture-MS	FSW = 0.0486	Class C: nucleus	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT1G27400	Predicted Synthetic Lethality Co-expression	FSW = 0.0605	Unknown	60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.2469	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G56190	Predicted Synthetic Lethality	FSW = 0.0047	Unknown	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.2679	Unknown	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.1765	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G10350	Predicted Affinity Capture-MS	FSW = 0.0172	Unknown	POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT4G31300	Predicted in vitro	FSW = 0.0129	Unknown	PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.1695	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G66658	Predicted Affinity Capture-MS	FSW = 0.0217	Unknown	ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G16630	Predicted Affinity Capture-MS	FSW = 0.0139	Unknown	RAD4 DAMAGED DNA BINDING
AT1G07420	Predicted Synthetic Lethality	FSW = 0.0032	Unknown	SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.2427	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1485	Unknown	RIBOSOMAL PROTEIN-RELATED
AT3G06530	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3491	Unknown	BINDING
AT2G33340	Predicted Co-purification	FSW = 0.0301	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G47250	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0905	Unknown	RNA HELICASE PUTATIVE
AT5G43940	Predicted Affinity Capture-MS	FSW = 0.0456	Unknown	HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE
AT5G17770	Predicted Affinity Capture-MS	FSW = 0.0139	Unknown	ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE
AT5G17310	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0285	Unknown	UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE
AT1G76810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1302	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT1G75990	Predicted Affinity Capture-MS	FSW = 0.0132	Unknown	26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT1G20200	Predicted Affinity Capture-MS Co-expression	FSW = 0.0147	Unknown	EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G10900	Predicted Synthetic Lethality	FSW = 0.0034	Unknown	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT3G53430	Predicted Affinity Capture-MS	FSW = 0.1031	Unknown	60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT3G03250	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0703	Unknown	UGP (UDP-GLUCOSE PYROPHOSPHORYLASE) UTPGLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G40360	Predicted Affinity Capture-MS Co-expression	FSW = 0.1565	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G60360	Predicted Synthetic Lethality Co-expression	FSW = 0.0135	Unknown	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.2669	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT2G47990	Predicted Affinity Capture-MS	FSW = 0.2288	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT5G13960	Predicted Shared biological function Co-expression	FSW = 0.0180	Unknown	SUVH4 (SU(VAR)3-9 HOMOLOG 4) DOUBLE-STRANDED METHYLATED DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K9 SPECIFIC) / METHYL-CPG BINDING / METHYL-CPNPG BINDING / METHYL-CPNPN BINDING
AT5G22100	Predicted Affinity Capture-Western interaction prediction	FSW = 0.1419	Unknown	RNA CYCLASE FAMILY PROTEIN
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.3938	Unknown	UNKNOWN PROTEIN
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.2061	Unknown	GTP-BINDING PROTEIN-RELATED
AT3G56340	Predicted Affinity Capture-MS	FSW = 0.0195	Unknown	40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.2445	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.1747	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G11900	Predicted two hybrid two hybrid Co-expression	FSW = 0.0243	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT4G34910	Predicted Affinity Capture-MS	FSW = 0.1665	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT4G31120	Predicted Affinity Capture-MS	FSW = 0.0082	Unknown	SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE
AT1G06720	Predicted Affinity Capture-MS	FSW = 0.2905	Unknown	INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G12650	Predicted Synthetic Lethality	FSW = 0.0220	Unknown	UNKNOWN PROTEIN
AT1G21170	Predicted Synthetic Lethality	FSW = 0.0028	Unknown	SEC5B
AT1G69070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3420	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G77470	Predicted Synthetic Lethality Co-expression	FSW = 0.0060	Unknown	REPLICATION FACTOR C 36 KDA PUTATIVE
AT1G80930	Predicted Synthetic Lethality	FSW = 0.0140	Unknown	MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT2G01290	Predicted Synthetic Lethality	FSW = 0.0152	Unknown	RIBOSE-5-PHOSPHATE ISOMERASE
AT2G16950	Predicted Colocalization Affinity Capture-Western	FSW = 0.0245	Unknown	TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G17250	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3018	Unknown	EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G18220	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2010	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G21440	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.2238	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G34357	Predicted Affinity Capture-MS	FSW = 0.3430	Unknown	BINDING
AT2G34570	Predicted Synthetic Lethality	FSW = 0.0247	Unknown	MEE21 (MATERNAL EFFECT EMBRYO ARREST 21)
AT2G43650	Predicted Synthetic Lethality Co-expression	FSW = 0.0454	Unknown	EMB2777 (EMBRYO DEFECTIVE 2777)
AT3G05870	Predicted Synthetic Lethality	FSW = 0.0037	Unknown	APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G09920	Predicted Synthetic Lethality	FSW = 0.0035	Unknown	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE
AT3G10530	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2285	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G15460	Predicted Affinity Capture-MS	FSW = 0.2087	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.2251	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1726	Unknown	KRR1 FAMILY PROTEIN
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.1735	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G56150	Predicted Affinity Capture-MS	FSW = 0.0378	Unknown	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT3G56510	Predicted Synthetic Lethality Affinity Capture-MS Affinity Capture-MS	FSW = 0.1966	Unknown	TBP-BINDING PROTEIN PUTATIVE
AT4G04940	Predicted Affinity Capture-MS	FSW = 0.2405	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G07410	Predicted Affinity Capture-MS	FSW = 0.2734	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G16630	Predicted Affinity Capture-MS	FSW = 0.1782	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT1G03530	Predicted Affinity Capture-MS Co-expression	FSW = 0.1135	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G04950	Predicted Affinity Capture-MS	FSW = 0.0144	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G08880	Predicted Affinity Capture-MS Co-expression	FSW = 0.0192	Unknown	H2AXA DNA BINDING
AT1G10170	Predicted Affinity Capture-MS	FSW = 0.0147	Unknown	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G15440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2103	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2942	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G31970	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1495	Unknown	STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G32750	Predicted Affinity Capture-MS	FSW = 0.0060	Unknown	HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G42440	Predicted Affinity Capture-MS Co-expression	FSW = 0.1495	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G60200	Predicted Affinity Capture-MS	FSW = 0.0220	Unknown	SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G71350	Predicted Affinity Capture-MS	FSW = 0.0250	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT1G72320	Predicted Affinity Capture-MS	FSW = 0.3067	Unknown	APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT1G80410	Predicted Affinity Capture-MS	FSW = 0.0232	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G22400	Predicted Affinity Capture-MS Co-expression	FSW = 0.0076	Unknown	NOL1/NOP2/SUN FAMILY PROTEIN
AT2G40700	Predicted Affinity Capture-MS Co-expression	FSW = 0.0794	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH17)
AT2G45330	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0152	Unknown	EMB1067 (EMBRYO DEFECTIVE 1067) TRNA 2-PHOSPHOTRANSFERASE/ TRANSFERASE TRANSFERRING PHOSPHORUS-CONTAINING GROUPS
AT3G01160	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1495	Unknown	UNKNOWN PROTEIN
AT3G09100	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0466	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.1545	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G46960	Predicted Affinity Capture-MS	FSW = 0.0520	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G60240	Predicted Affinity Capture-MS	FSW = 0.0387	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G08500	Predicted Affinity Capture-MS	FSW = 0.0233	Unknown	MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT4G25730	Predicted interaction prediction Affinity Capture-Western interologs mapping Co-expression	FSW = 0.0812	Unknown	FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G28200	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2694	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G28450	Predicted Affinity Capture-Western Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2578	Unknown	NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G30991	Predicted Affinity Capture-MS	FSW = 0.3217	Unknown	NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G08420	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3033	Unknown	RNA BINDING
AT5G13780	Predicted Affinity Capture-MS Co-expression	FSW = 0.0114	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G14050	Predicted Affinity Capture-MS interaction prediction	FSW = 0.1044	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G14520	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1760	Unknown	PESCADILLO-RELATED
AT5G14530	Predicted Affinity Capture-MS	FSW = 0.0070	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G15750	Predicted Affinity Capture-Western Affinity Capture-MS Co-expression	FSW = 0.2623	Unknown	RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G17250	Predicted interologs mapping	FSW = 0.0059	Unknown	CATALYTIC/ TRANSFERASE
AT5G41190	Predicted Affinity Capture-MS Co-expression	FSW = 0.0262	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G51120	Predicted Affinity Capture-MS	FSW = 0.0340	Unknown	PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING
AT5G61770	Predicted Affinity Capture-MS Co-expression	FSW = 0.1580	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT5G66100	Predicted Affinity Capture-MS	FSW = 0.0829	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT5G13010	Predicted Synthetic Lethality	FSW = 0.0014	Unknown	EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G16750	Predicted Affinity Capture-MS	FSW = 0.1444	Unknown	TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G19820	Predicted Colocalization Affinity Capture-Western	FSW = 0.0080	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G54750	Predicted Synthetic Lethality	FSW = 0.0078	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT5G61330	Predicted Affinity Capture-MS	FSW = 0.1459	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.3735	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G09670	Predicted Affinity Capture-MS	FSW = 0.0324	Unknown	PWWP DOMAIN-CONTAINING PROTEIN
AT1G29550	Predicted Affinity Capture-MS	FSW = 0.0245	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE
AT1G09000	Predicted Affinity Capture-MS	FSW = 0.0187	Unknown	ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE
AT1G04230	Predicted Affinity Capture-MS	FSW = 0.0330	Unknown	UNKNOWN PROTEIN
AT1G21160	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0685	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT1G16040	Predicted Synthetic Lethality	FSW = 0.0221	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN GPI ANCHOR BIOSYNTHETIC PROCESS LOCATED IN INTEGRAL TO MEMBRANE ENDOPLASMIC RETICULUM MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GPI BIOSYNTHESIS PROTEIN PIG-F (INTERPROIPR009580) HAS 210 BLAST HITS TO 210 PROTEINS IN 94 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 96 FUNGI - 80 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK)
AT1G07840	Predicted Synthetic Lethality	FSW = 0.0684	Unknown	LEUCINE ZIPPER FACTOR-RELATED
AT1G71100	Predicted Synthetic Lethality	FSW = 0.0247	Unknown	RSW10 (RADIAL SWELLING 10) RIBOSE-5-PHOSPHATE ISOMERASE
AT4G12600	Predicted two hybrid Co-expression	FSW = 0.1069	Unknown	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT4G25630 - ( FIB2 (FIBRILLARIN 2) snoRNA binding )

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