Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G19670 - ( PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) protein-arginine N-methyltransferase )
13 Proteins interacs with AT2G19670| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G29510
   | Experimental | FSW = 0.2771
| Class A:nucleuscytosolClass D:cytosol (p = 0.67) | PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE |
| AT4G25630
| Experimental | FSW = 0.0286
| Class A:nucleusClass B:cytosol | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT5G20240
| Experimental | FSW = 0.0769
| Class A:nucleusClass B:cytosol | PI (PISTILLATA) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G44680
| Predictedtwo hybridtwo hybrid | FSW = 0.0172
| Class C:nucleuscytosol | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
| AT3G03920
| PredictedbiochemicalCo-expression | FSW = 0.0835
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT3G50670
| Predictedtwo hybrid | FSW = 0.0267
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G48920
| PredictedbiochemicalCo-expression | FSW = 0.1462
| Class C:nucleus | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G07660 | Predictedbiochemical | FSW = 0.0175
| Unknown | HISTONE H4 |
| AT1G07510
| Predictedtwo hybrid | FSW = 0.0385
| Unknown | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT3G13224
| Predictedbiochemicalbiochemicalbiochemical | FSW = 0.0921
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G40490
| PredictedSynthetic LethalitySynthetic Lethalitybiochemicalbiochemicalbiochemicalbiochemicalinterologs mappingSynthetic Lethalitytwo hybridCo-expression | FSW = 0.1241
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G04870
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1442
| Unknown | PRMT10 METHYLTRANSFERASE |
| AT3G20020
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4444
| Unknown | PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6) METHYLTRANSFERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.218 seconds to be build.
This page takes 0.218 seconds to be build.