Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03920 - ( Gar1 RNA-binding region family protein )
57 Proteins interacs with AT3G03920| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G14420
   | PredictedPhenotypic Enhancement | FSW = 0.1125
| Class C:plastidnucleus | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
| AT3G20550
| Predictedco-fractionationCo-fractionation | FSW = 0.0127
| Class C:plastidnucleus | DDL (DAWDLE) |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.0227
| Class C:plastidnucleus | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT5G40950
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0219
| Class C:plastid | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G80030
| PredictedAffinity Capture-MS | FSW = 0.0402
| Class C:plastid | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G15170
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0178
| Class C:plastid | MATE EFFLUX FAMILY PROTEIN |
| AT5G63980
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0732
| Class C:plastid | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
| AT3G58510
| PredictedAffinity Capture-MS | FSW = 0.0402
| Class C:nucleus | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.0206
| Class C:nucleus | MYB FAMILY TRANSCRIPTION FACTOR |
| AT3G13460
| PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0978
| Class C:nucleus | ECT2 PROTEIN BINDING |
| AT4G28860
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSSynthetic Lethality | FSW = 0.0321
| Class C:nucleus | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G29510
| Predictedbiochemical | FSW = 0.0407
| Class C:nucleus | PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE |
| AT2G19670
| PredictedbiochemicalCo-expression | FSW = 0.0835
| Class C:nucleus | PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.0772
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G25630
| PredictedAffinity Capture-WesternAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1665
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT4G26600
| PredictedAffinity Capture-MS | FSW = 0.0164
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT2G41500
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0304
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT3G57150
| PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complexinteraction predictionCo-expression | FSW = 0.1482
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT5G08180
| Predictedinteraction predictionReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1867
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.0331
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT5G55920
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0285
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G16810
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0779
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT3G62310
| PredictedAffinity Capture-MS | FSW = 0.0615
| Class C:nucleus | RNA HELICASE PUTATIVE |
| AT2G20490
| Predictedinteraction predictionAffinity Capture-WesternCo-expression | FSW = 0.1763
| Class C:nucleus | NOP10 RNA BINDING |
| AT3G26590
| PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT4G19690
| Predictedco-fractionationCo-fractionation | FSW = 0.0311
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
| AT2G42520
| PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT4G30990
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0332
| Unknown | BINDING |
| AT5G02730
| PredictedSynthetic Rescue | FSW = 0.0113
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT5G22100
| PredictedAffinity Capture-Western | FSW = 0.0611
| Unknown | RNA CYCLASE FAMILY PROTEIN |
| AT3G56340
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0272
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
| AT3G44320
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1681
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
| AT1G03530
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.0335
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G08260
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0274
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G21440
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1097
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G24990
| PredictedSynthetic Lethality | FSW = 0.0590
| Unknown | RIO1 FAMILY PROTEIN |
| AT2G34357 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1190
| Unknown | BINDING |
| AT2G47970
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0967
| Unknown | NPL4 FAMILY PROTEIN |
| AT3G01160
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0597
| Unknown | UNKNOWN PROTEIN |
| AT1G31970
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0914
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G42440
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0878
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT1G63370
| PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
| AT1G72320
| PredictedAffinity Capture-MS | FSW = 0.1286
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
| AT2G16950
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0162
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT3G14100
| Predictedtwo hybrid | FSW = 0.0387
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
| AT5G19300
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0304
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
| AT5G66610
| Predictedtwo hybrid | FSW = 0.0070
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
| AT3G09720
| PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0246
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G24080
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0756
| Unknown | KRR1 FAMILY PROTEIN |
| AT4G30991 | PredictedAffinity Capture-MS | FSW = 0.0768
| Unknown | KRR1 FAMILY PROTEIN |
| AT4G32720
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0577
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
| AT5G40530
| PredictedSynthetic LethalityCo-expression | FSW = 0.0095
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
| AT1G79880
| PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT5G40490
| Predictedtwo hybridCo-expression | FSW = 0.0278
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G27120
| Predictedinteraction prediction | FSW = 0.0227
| Unknown | TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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