Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03920 - ( Gar1 RNA-binding region family protein )

57 Proteins interacs with AT3G03920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G14420

Predicted

Phenotypic Enhancement

FSW = 0.1125

Class C:

plastid

nucleus

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G20550

Predicted

co-fractionation

Co-fractionation

FSW = 0.0127

Class C:

plastid

nucleus

DDL (DAWDLE)
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.0227

Class C:

plastid

nucleus

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT5G40950

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0219

Class C:

plastid

RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G80030

Predicted

Affinity Capture-MS

FSW = 0.0402

Class C:

plastid

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G15170

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0178

Class C:

plastid

MATE EFFLUX FAMILY PROTEIN
AT5G63980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0732

Class C:

plastid

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.0402

Class C:

nucleus

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT5G45420

Predicted

Affinity Capture-MS

FSW = 0.0206

Class C:

nucleus

MYB FAMILY TRANSCRIPTION FACTOR
AT3G13460

Predicted

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0978

Class C:

nucleus

ECT2 PROTEIN BINDING
AT4G28860

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Synthetic Lethality

FSW = 0.0321

Class C:

nucleus

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G29510

Predicted

biochemical

FSW = 0.0407

Class C:

nucleus

PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT2G19670

Predicted

biochemical

Co-expression

FSW = 0.0835

Class C:

nucleus

PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.0772

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1665

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0164

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT2G41500

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0304

Class C:

nucleus

EMB2776 NUCLEOTIDE BINDING
AT3G57150

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

interaction prediction

Co-expression

FSW = 0.1482

Class C:

nucleus

NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT5G08180

Predicted

interaction prediction

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1867

Class C:

nucleus

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.0331

Class C:

nucleus

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT5G55920

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0285

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT3G16810

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0779

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.0615

Class C:

nucleus

RNA HELICASE PUTATIVE
AT2G20490

Predicted

interaction prediction

Affinity Capture-Western

Co-expression

FSW = 0.1763

Class C:

nucleus

NOP10 RNA BINDING
AT3G26590

Predicted

Affinity Capture-MS

FSW = 0.0138

Unknown

MATE EFFLUX FAMILY PROTEIN
AT4G19690

Predicted

co-fractionation

Co-fractionation

FSW = 0.0311

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT2G42520

Predicted

Affinity Capture-MS

FSW = 0.0353

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT4G30990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0332

Unknown

BINDING
AT5G02730

Predicted

Synthetic Rescue

FSW = 0.0113

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.0588

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT5G22100

Predicted

Affinity Capture-Western

FSW = 0.0611

Unknown

RNA CYCLASE FAMILY PROTEIN
AT3G56340

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0272

Unknown

40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT3G44320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1681

Unknown

NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT1G03530

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.0335

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G08260

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0274

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.0201

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G21440

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1097

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G24990

Predicted

Synthetic Lethality

FSW = 0.0590

Unknown

RIO1 FAMILY PROTEIN
AT2G34357Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1190

Unknown

BINDING
AT2G47970

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0967

Unknown

NPL4 FAMILY PROTEIN
AT3G01160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0597

Unknown

UNKNOWN PROTEIN
AT1G31970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0914

Unknown

STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G42440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0878

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G63370

Predicted

Affinity Capture-MS

FSW = 0.0051

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.1286

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT2G16950

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0162

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT3G14100

Predicted

two hybrid

FSW = 0.0387

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT5G19300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0304

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G66610

Predicted

two hybrid

FSW = 0.0070

Unknown

DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING
AT3G09720

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0246

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G24080

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0756

Unknown

KRR1 FAMILY PROTEIN
AT4G30991Predicted

Affinity Capture-MS

FSW = 0.0768

Unknown

KRR1 FAMILY PROTEIN
AT4G32720

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0577

Unknown

ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT5G40530

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0095

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK)
AT1G79880

Predicted

Affinity Capture-MS

FSW = 0.0430

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT5G40490

Predicted

two hybrid

Co-expression

FSW = 0.0278

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G27120

Predicted

interaction prediction

FSW = 0.0227

Unknown

TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454