Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59240 - ( 40S ribosomal protein S8 (RPS8B) )
57 Proteins interacs with AT5G59240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.3906
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT2G18020 | PredictedAffinity Capture-MS | FSW = 0.4644
| Unknown | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.4036
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.2453
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.4274
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.3951
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.4612
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.2612
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.3294
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.4977
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34480 | PredictedAffinity Capture-MS | FSW = 0.3064
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT5G20290 | PredictedAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4921
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.3473
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT3G03920 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.3948
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.2871
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.2639
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.1979
| Unknown | RNA BINDING |
AT2G04390 | PredictedAffinity Capture-MS | FSW = 0.1957
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.4684
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.3440
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT3G11400 | PredictedAffinity Capture-MS | FSW = 0.2094
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.3575
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G76810 | PredictedAffinity Capture-MS | FSW = 0.2641
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.2758
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT3G53430 | PredictedAffinity Capture-MS | FSW = 0.1240
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT4G11420 | PredictedAffinity Capture-MS | FSW = 0.0855
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.2579
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.2669
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.4259
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT3G05060 | PredictedAffinity Capture-MS | FSW = 0.2000
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT5G66540 | PredictedAffinity Capture-MS | FSW = 0.2471
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT5G58420 | PredictedAffinity Capture-MS | FSW = 0.5515
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT1G63810 | PredictedAffinity Capture-MS | FSW = 0.2932
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT4G18040 | PredictedAffinity Capture-MS | FSW = 0.1150
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.3903
| Unknown | UNKNOWN PROTEIN |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.3498
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.3846
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G16350 | PredictedAffinity Capture-MS | FSW = 0.0806
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.3461
| Unknown | BINDING |
AT2G46280 | PredictedAffinity Capture-MS | FSW = 0.0764
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.3890
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.3076
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.2821
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G56150 | PredictedAffinity Capture-MS | FSW = 0.1614
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT5G15770 | Predictedtwo hybrid | FSW = 0.0160
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
AT1G31660 | PredictedAffinity Capture-MS | FSW = 0.2775
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G42440 | PredictedAffinity Capture-MS | FSW = 0.2664
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT2G17250 | PredictedAffinity Capture-MS | FSW = 0.2623
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.1072
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G51270 | Predictedco-fractionationCo-fractionation | FSW = 0.2371
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT4G19210 | PredictedAffinity Capture-MS | FSW = 0.3730
| Unknown | ATRLI2 TRANSPORTER |
AT4G28200 | PredictedAffinity Capture-MS | FSW = 0.2300
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT4G30991 | PredictedAffinity Capture-MS | FSW = 0.2569
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT5G08420 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2835
| Unknown | RNA BINDING |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.2683
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454