Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59240 - ( 40S ribosomal protein S8 (RPS8B) )

57 Proteins interacs with AT5G59240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.3906

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.4644

Unknown

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.4036

Unknown

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.2453

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.4274

Unknown

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.3951

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.4612

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G33140

Predicted

Affinity Capture-MS

FSW = 0.2612

Unknown

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.3294

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.4977

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.3064

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT5G20290

Predicted

Affinity Capture-MS

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4921

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.3473

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G03920

Predicted

Affinity Capture-MS

FSW = 0.0588

Unknown

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.3948

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.2871

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.2639

Unknown

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G11964Predicted

Affinity Capture-MS

FSW = 0.1979

Unknown

RNA BINDING
AT2G04390

Predicted

Affinity Capture-MS

FSW = 0.1957

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.4684

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.3440

Unknown

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G11400

Predicted

Affinity Capture-MS

FSW = 0.2094

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.3575

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810Predicted

Affinity Capture-MS

FSW = 0.2641

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.2758

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT3G53430

Predicted

Affinity Capture-MS

FSW = 0.1240

Unknown

60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT4G11420

Predicted

Affinity Capture-MS

FSW = 0.0855

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.2579

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.2669

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.4259

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G05060

Predicted

Affinity Capture-MS

FSW = 0.2000

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT5G66540

Predicted

Affinity Capture-MS

FSW = 0.2471

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.5515

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G63810

Predicted

Affinity Capture-MS

FSW = 0.2932

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT4G18040

Predicted

Affinity Capture-MS

FSW = 0.1150

Unknown

EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.3903

Unknown

UNKNOWN PROTEIN
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.3498

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.3846

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT1G16350

Predicted

Affinity Capture-MS

FSW = 0.0806

Unknown

INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT2G27970

Predicted

two hybrid

FSW = 0.0063

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G34357Predicted

Affinity Capture-MS

FSW = 0.3461

Unknown

BINDING
AT2G46280

Predicted

Affinity Capture-MS

FSW = 0.0764

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.3890

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.3076

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.2821

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G56150

Predicted

Affinity Capture-MS

FSW = 0.1614

Unknown

EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT5G15770

Predicted

two hybrid

FSW = 0.0160

Unknown

ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
AT1G31660

Predicted

Affinity Capture-MS

FSW = 0.2775

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440

Predicted

Affinity Capture-MS

FSW = 0.2664

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT2G17250

Predicted

Affinity Capture-MS

FSW = 0.2623

Unknown

EMB2762 (EMBRYO DEFECTIVE 2762)
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.1072

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G51270

Predicted

co-fractionation

Co-fractionation

FSW = 0.2371

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT4G19210

Predicted

Affinity Capture-MS

FSW = 0.3730

Unknown

ATRLI2 TRANSPORTER
AT4G28200

Predicted

Affinity Capture-MS

FSW = 0.2300

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G30991Predicted

Affinity Capture-MS

FSW = 0.2569

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT5G08420

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2835

Unknown

RNA BINDING
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.2683

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454