Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17390 - ( 60S ribosomal protein L15 (RPL15B) )

83 Proteins interacs with AT4G17390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.5765

Class C:

nucleus

40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.4118

Class C:

nucleus

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.6028

Class C:

nucleus

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.4596

Class C:

nucleus

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.4051

Class C:

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.3323

Class C:

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.6496

Class C:

nucleus

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G47610

Predicted

Affinity Capture-MS

FSW = 0.4314

Class C:

nucleus

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.4029

Class C:

nucleus

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.4632

Class C:

nucleus

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.5574

Class C:

nucleus

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.5389

Class C:

nucleus

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.3601

Class C:

nucleus

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G03920

Predicted

Affinity Capture-MS

FSW = 0.0331

Class C:

nucleus

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0580

Class C:

nucleus

HISTONE H4
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.2029

Class C:

nucleus

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1712

Class C:

nucleus

RNA BINDING
AT2G27710

Predicted

Affinity Capture-MS

FSW = 0.4831

Class C:

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.5396

Class C:

nucleus

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.4321

Class C:

nucleus

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.4467

Class C:

nucleus

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G23620

Predicted

Affinity Capture-MS

FSW = 0.2294

Class C:

nucleus

BRIX DOMAIN-CONTAINING PROTEIN
AT4G29390Predicted

Affinity Capture-MS

FSW = 0.2835

Class C:

nucleus

40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.4784

Class C:

nucleus

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700

Predicted

Affinity Capture-MS

FSW = 0.3500

Class C:

nucleus

60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.2357

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3614

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G16810

Predicted

Affinity Capture-MS

FSW = 0.2756

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G48240

Predicted

Affinity Capture-MS

FSW = 0.2725

Class C:

nucleus

UNKNOWN PROTEIN
AT2G37990

Predicted

Affinity Capture-MS

FSW = 0.1290

Class C:

nucleus

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G55620

Predicted

Affinity Capture-MS

FSW = 0.2222

Class C:

nucleus

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.5123

Class C:

nucleus

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT4G22380

Predicted

Enriched domain pair

Gene neighbors method

Co-expression

FSW = 0.0525

Class C:

nucleus

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.2599

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G33140

Predicted

Affinity Capture-MS

FSW = 0.4559

Unknown

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G16720

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1936

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15A)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.4186

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.3940

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.4337

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G27850

Predicted

Affinity Capture-MS

FSW = 0.2807

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT1G34030Predicted

Affinity Capture-MS

FSW = 0.2667

Unknown

40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT1G36050

Predicted

two hybrid

FSW = 0.0414

Unknown

UNKNOWN PROTEIN
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.5251

Unknown

60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.4306

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.5293

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.5552

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0149

Unknown

IMPORTIN BETA-2 PUTATIVE
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.5871

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G16780

Predicted

Affinity Capture-MS

FSW = 0.0762

Unknown

60S RIBOSOMAL PROTEIN L19 (RPL19B)
AT4G02230

Predicted

Affinity Capture-MS

FSW = 0.4428

Unknown

60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.5579

Unknown

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.3889

Unknown

60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.3968

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.4815

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT1G07030

Predicted

two hybrid

FSW = 0.0218

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.2992

Unknown

GTP-BINDING PROTEIN-RELATED
AT4G17620

Predicted

Affinity Capture-MS

FSW = 0.2667

Unknown

GLYCINE-RICH PROTEIN
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.4259

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0568

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G22660

Predicted

Affinity Capture-MS

FSW = 0.2049

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G09500

Predicted

Affinity Capture-MS

FSW = 0.4058

Unknown

40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.5591

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.2881

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.4377

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.2799

Unknown

UNKNOWN PROTEIN
AT1G18660

Predicted

two hybrid

FSW = 0.0633

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G02910

Predicted

two hybrid

FSW = 0.0372

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BUTIROSIN BIOSYNTHESIS BTRG-LIKE (INTERPROIPR013024) AIG2-LIKE (INTERPROIPR009288) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G467201) HAS 210 BLAST HITS TO 210 PROTEINS IN 66 SPECIES ARCHAE - 2 BACTERIA - 27 METAZOA - 122 FUNGI - 0 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 18 (SOURCE NCBI BLINK)
AT4G36630

Predicted

two hybrid

FSW = 0.0546

Unknown

EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR
AT2G18220

Predicted

Affinity Capture-MS

FSW = 0.2177

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT3G15460

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3007

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.5596

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.2124

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.1167

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G16280

Predicted

Affinity Capture-MS

FSW = 0.0698

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G79150

Predicted

Affinity Capture-MS

FSW = 0.2003

Unknown

BINDING
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.1720

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.5110

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.5510

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT5G14520

Predicted

Affinity Capture-MS

FSW = 0.2411

Unknown

PESCADILLO-RELATED
AT5G46840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2372

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G18905

Predicted

Affinity Capture-MS

FSW = 0.0726

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.3852

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT4G12600

Predicted

Enriched domain pair

Gene neighbors method

Co-expression

FSW = 0.0533

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454