Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17390 - ( 60S ribosomal protein L15 (RPL15B) )
83 Proteins interacs with AT4G17390| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G04920
   | PredictedAffinity Capture-MS | FSW = 0.5765
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT3G49910
| PredictedAffinity Capture-MS | FSW = 0.4118
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.6028
| Class C:nucleus | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G31700
| PredictedAffinity Capture-MS | FSW = 0.4596
| Class C:nucleus | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MS | FSW = 0.4051
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT3G09200
| PredictedAffinity Capture-MS | FSW = 0.3323
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.6496
| Class C:nucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.4314
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT5G15200
| PredictedAffinity Capture-MS | FSW = 0.4029
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.4632
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.5574
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT5G22440
| PredictedAffinity Capture-MS | FSW = 0.5389
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.3601
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT3G03920
| PredictedAffinity Capture-MS | FSW = 0.0331
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0580
| Class C:nucleus | HISTONE H4 |
| AT3G58510
| PredictedAffinity Capture-MS | FSW = 0.2029
| Class C:nucleus | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1712
| Class C:nucleus | RNA BINDING |
| AT2G27710
| PredictedAffinity Capture-MS | FSW = 0.4831
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.5396
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT5G39740
| PredictedAffinity Capture-MS | FSW = 0.4321
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.4467
| Class C:nucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G23620
| PredictedAffinity Capture-MS | FSW = 0.2294
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.2835
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.4784
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT3G06700
| PredictedAffinity Capture-MS | FSW = 0.3500
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
| AT4G25630
| PredictedAffinity Capture-MS | FSW = 0.2357
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT1G72440
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3614
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G16810
| PredictedAffinity Capture-MS | FSW = 0.2756
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT5G48240
| PredictedAffinity Capture-MS | FSW = 0.2725
| Class C:nucleus | UNKNOWN PROTEIN |
| AT2G37990
| PredictedAffinity Capture-MS | FSW = 0.1290
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
| AT3G55620
| PredictedAffinity Capture-MS | FSW = 0.2222
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT5G58420
| PredictedAffinity Capture-MS | FSW = 0.5123
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
| AT4G22380
| PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0525
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.2599
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT1G33140
| PredictedAffinity Capture-MS | FSW = 0.4559
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G16720
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1936
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.4186
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G34480
| PredictedAffinity Capture-MS | FSW = 0.3940
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.4337
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G27850
| PredictedAffinity Capture-MS | FSW = 0.2807
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
| AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.2667
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
| AT1G36050
| Predictedtwo hybrid | FSW = 0.0414
| Unknown | UNKNOWN PROTEIN |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.5251
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT1G48830
| PredictedAffinity Capture-MS | FSW = 0.4306
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.5293
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.5552
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT5G53480
| PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | IMPORTIN BETA-2 PUTATIVE |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.5871
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G16780
| PredictedAffinity Capture-MS | FSW = 0.0762
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
| AT4G02230
| PredictedAffinity Capture-MS | FSW = 0.4428
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.5579
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT5G46430
| PredictedAffinity Capture-MS | FSW = 0.3889
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.3968
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.4815
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT1G07030
| Predictedtwo hybrid | FSW = 0.0218
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT1G50920
| PredictedAffinity Capture-MS | FSW = 0.2992
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT4G17620
| PredictedAffinity Capture-MS | FSW = 0.2667
| Unknown | GLYCINE-RICH PROTEIN |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.4259
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT3G22660
| PredictedAffinity Capture-MS | FSW = 0.2049
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT5G09500
| PredictedAffinity Capture-MS | FSW = 0.4058
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.5591
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.2881
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.4377
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT1G10490
| PredictedAffinity Capture-MS | FSW = 0.2799
| Unknown | UNKNOWN PROTEIN |
| AT1G18660
| Predictedtwo hybrid | FSW = 0.0633
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT3G02910
| Predictedtwo hybrid | FSW = 0.0372
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BUTIROSIN BIOSYNTHESIS BTRG-LIKE (INTERPROIPR013024) AIG2-LIKE (INTERPROIPR009288) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G467201) HAS 210 BLAST HITS TO 210 PROTEINS IN 66 SPECIES ARCHAE - 2 BACTERIA - 27 METAZOA - 122 FUNGI - 0 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 18 (SOURCE NCBI BLINK) |
| AT4G36630
| Predictedtwo hybrid | FSW = 0.0546
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
| AT2G18220
| PredictedAffinity Capture-MS | FSW = 0.2177
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT3G15460
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3007
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.5596
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.2124
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.1167
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G16280
| PredictedAffinity Capture-MS | FSW = 0.0698
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G79150
| PredictedAffinity Capture-MS | FSW = 0.2003
| Unknown | BINDING |
| AT3G16840
| PredictedAffinity Capture-MS | FSW = 0.1720
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.5110
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.5510
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT5G14520
| PredictedAffinity Capture-MS | FSW = 0.2411
| Unknown | PESCADILLO-RELATED |
| AT5G46840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2372
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G18905
| PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.3852
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT4G12600
| PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0533
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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