Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G48830 - ( 40S ribosomal protein S7 (RPS7A) )
56 Proteins interacs with AT1G48830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.4288
| Class C:plastidplasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.4290
| Class C:plastidplasma membrane | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.2382
| Class C:plastidplasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.4847
| Class C:plastidplasma membrane | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.2687
| Class C:plastidplasma membrane | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.5110
| Class C:plastidplasma membrane | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.3723
| Class C:plastid | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.4045
| Class C:plastid | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.5814
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.5067
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.3378
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.3833
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.3599
| Class C:plasma membrane | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34480 | PredictedAffinity Capture-MS | FSW = 0.3260
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.4890
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT5G16130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1088
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S7 (RPS7C) |
AT2G27710 | PredictedAffinity Capture-MS | FSW = 0.4800
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.4582
| Class C:plasma membrane | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.4360
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0171
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.4447
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G46430 | PredictedAffinity Capture-MS | FSW = 0.5358
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.5429
| Class C:plasma membrane | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02230 | PredictedAffinity Capture-MS | FSW = 0.5930
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.4660
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.3298
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.4537
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.1002
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G77840 | PredictedAffinity Capture-MS | FSW = 0.1357
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT2G31660 | Predictedin vitro | FSW = 0.0162
| Unknown | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0227
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.4074
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT3G06700 | PredictedAffinity Capture-MS | FSW = 0.5001
| Unknown | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.4306
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.4261
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0207
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT5G66540 | PredictedAffinity Capture-Western | FSW = 0.0962
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT5G09500 | PredictedAffinity Capture-MS | FSW = 0.5588
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
AT3G02560 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0188
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT3G10090 | PredictedAffinity Capture-MS | FSW = 0.0952
| Unknown | 40S RIBOSOMAL PROTEIN S28 (RPS28A) |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.4886
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.3407
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G16950 | Predictedin vitro | FSW = 0.0390
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.2968
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G31660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1323
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.4691
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
AT3G23390 | PredictedAffinity Capture-MS | FSW = 0.5900
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.3260
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT2G40430 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.4398
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G36730 | PredictedAffinity Capture-MS | FSW = 0.0586
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT5G56360 | Predictedtwo hybrid | FSW = 0.0353
| Unknown | CALMODULIN-BINDING PROTEIN |
AT5G23540 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT4G19050 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | ATP BINDING / PROTEIN BINDING |
AT2G04620 | Predictedinteraction predictiontwo hybrid | FSW = 0.0356
| Unknown | CATION EFFLUX FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454