Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G48830 - ( 40S ribosomal protein S7 (RPS7A) )

56 Proteins interacs with AT1G48830
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.4288

Class C:

plastid

plasma membrane

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.4290

Class C:

plastid

plasma membrane

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.2382

Class C:

plastid

plasma membrane

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.4847

Class C:

plastid

plasma membrane

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.2687

Class C:

plastid

plasma membrane

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.5110

Class C:

plastid

plasma membrane

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.3723

Class C:

plastid

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G33140

Predicted

Affinity Capture-MS

FSW = 0.4045

Class C:

plastid

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.5814

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.5067

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.3378

Class C:

plasma membrane

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.3833

Class C:

plasma membrane

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.3599

Class C:

plasma membrane

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.3260

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.4890

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G16130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1088

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S7 (RPS7C)
AT2G27710

Predicted

Affinity Capture-MS

FSW = 0.4800

Class C:

plasma membrane

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.4582

Class C:

plasma membrane

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.4360

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT5G52640

Predicted

two hybrid

FSW = 0.0171

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.4447

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.5358

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.5429

Class C:

plasma membrane

STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230

Predicted

Affinity Capture-MS

FSW = 0.5930

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.4660

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.3298

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.4537

Unknown

60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G25780

Predicted

Affinity Capture-MS

FSW = 0.1002

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT1G77840

Predicted

Affinity Capture-MS

FSW = 0.1357

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT2G31660Predicted

in vitro

FSW = 0.0162

Unknown

SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER
AT3G10330

Predicted

interaction prediction

FSW = 0.0227

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.4074

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700

Predicted

Affinity Capture-MS

FSW = 0.5001

Unknown

60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.4306

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390Predicted

Affinity Capture-MS

FSW = 0.4261

Unknown

40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT2G41630

Predicted

two hybrid

FSW = 0.0207

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT5G66540

Predicted

Affinity Capture-Western

FSW = 0.0962

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT5G09500

Predicted

Affinity Capture-MS

FSW = 0.5588

Unknown

40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT3G02560

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0188

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7B)
AT3G10090Predicted

Affinity Capture-MS

FSW = 0.0952

Unknown

40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.4886

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.3407

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G16950

Predicted

in vitro

FSW = 0.0390

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT1G22240

Predicted

Affinity Capture-MS

FSW = 0.2968

Unknown

APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G31660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1323

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G57660Predicted

Affinity Capture-MS

FSW = 0.4691

Unknown

60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT3G23390

Predicted

Affinity Capture-MS

FSW = 0.5900

Unknown

60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.3260

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT4G38630

Predicted

Affinity Capture-MS

FSW = 0.0388

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT2G40430

Predicted

Affinity Capture-MS

FSW = 0.0375

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.4398

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G36730

Predicted

Affinity Capture-MS

FSW = 0.0586

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT5G56360

Predicted

two hybrid

FSW = 0.0353

Unknown

CALMODULIN-BINDING PROTEIN
AT5G23540

Predicted

two hybrid

FSW = 0.0248

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT4G19050

Predicted

two hybrid

FSW = 0.0169

Unknown

ATP BINDING / PROTEIN BINDING
AT2G04620Predicted

interaction prediction

two hybrid

FSW = 0.0356

Unknown

CATION EFFLUX FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454