Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02230 - ( 60S ribosomal protein L19 (RPL19C) )
57 Proteins interacs with AT4G02230| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G04920
   | PredictedAffinity Capture-MS | FSW = 0.5937
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT3G49910
| PredictedAffinity Capture-MS | FSW = 0.4558
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT4G31700
| PredictedAffinity Capture-MS | FSW = 0.3832
| Class C:plasma membrane | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MS | FSW = 0.2453
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.4969
| Class C:plasma membrane | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.3465
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.5014
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.3419
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G34480
| PredictedAffinity Capture-MS | FSW = 0.3064
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT1G48830
| PredictedAffinity Capture-MS | FSW = 0.5930
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.5056
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT1G02780
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0169
| Class C:plasma membrane | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G27710
| PredictedAffinity Capture-MS | FSW = 0.4545
| Class C:plasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.4663
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.3791
| Class C:plasma membrane | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G34670
| PredictedAffinity Capture-MS | FSW = 0.4663
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.5906
| Class C:plasma membrane | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G16780
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0543
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
| AT1G76850
| Predictedtwo hybridtwo hybrid | FSW = 0.0148
| Class C:plasma membrane | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.4716
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT5G46430
| PredictedAffinity Capture-MS | FSW = 0.5988
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.2884
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.4922
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.3511
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G33140
| PredictedAffinity Capture-MS | FSW = 0.3823
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0079
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.4488
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT3G56090
| Predictedtwo hybrid | FSW = 0.0492
| Unknown | ATFER3 (FERRITIN 3) BINDING / FERRIC IRON BINDING / OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
| AT5G01600
| Predictedtwo hybrid | FSW = 0.0347
| Unknown | ATFER1 FERRIC IRON BINDING / IRON ION BINDING |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.1509
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.4428
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.4037
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.4178
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT3G06700
| PredictedAffinity Capture-MS | FSW = 0.5509
| Unknown | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
| AT2G41840
| PredictedAffinity Capture-MS | FSW = 0.2475
| Unknown | 40S RIBOSOMAL PROTEIN S2 (RPS2C) |
| AT3G53020
| PredictedAffinity Capture-MS | FSW = 0.4400
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0518
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT5G64390
| Predictedtwo hybrid | FSW = 0.0172
| Unknown | HEN4 (HUA ENHANCER 4) RNA BINDING / NUCLEIC ACID BINDING |
| AT5G09500
| PredictedAffinity Capture-MS | FSW = 0.5285
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.3753
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.4834
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT5G23540
| Predictedtwo hybrid | FSW = 0.0094
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT1G21170 | Predictedtwo hybrid | FSW = 0.0083
| Unknown | SEC5B |
| AT1G28350 | Predictedtwo hybrid | FSW = 0.0296
| Unknown | ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE |
| AT2G33840
| Predictedtwo hybridtwo hybrid | FSW = 0.0242
| Unknown | TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN |
| AT3G05760
| Predictedtwo hybridtwo hybrid | FSW = 0.0032
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT4G15930
| Predictedtwo hybrid | FSW = 0.0136
| Unknown | MICROTUBULE MOTOR |
| AT5G46190
| Predictedtwo hybrid | FSW = 0.0459
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
| AT1G22240
| PredictedAffinity Capture-MS | FSW = 0.2930
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
| AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.5761
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.3890
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT3G23390
| PredictedAffinity Capture-MS | FSW = 0.6059
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.3223
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.4073
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G18600
| Predictedinterologs mapping | FSW = 0.0116
| Unknown | RUB1-CONJUGATING ENZYME PUTATIVE |
| AT4G28715 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | RUB1-CONJUGATING ENZYME PUTATIVE |
| AT1G54390
| Predictedtwo hybrid | FSW = 0.0041
| Unknown | PHD FINGER PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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