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AT4G34670 - ( 40S ribosomal protein S3A (RPS3aB) )

77 Proteins interacs with AT4G34670

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G48100	Experimental two hybrid	FSW = 0.0165	Unknown	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.5884	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.4137	Class C: plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.4810	Class C: plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2973	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.5311	Class C: plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2821	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.5224	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.3522	Class C: plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.3424	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.5354	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.4565	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.4551	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.4392	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.1972	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.4044	Class C: plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.3860	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4043	Class C: plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.4360	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.5701	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G04840	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2863	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3A (RPS3AA)
AT5G52640	Predicted Synthetic Lethality	FSW = 0.0166	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.4462	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.3911	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G50480	Predicted Affinity Capture-MS	FSW = 0.0193	Class C: plasma membrane	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) ATP BINDING / COPPER ION BINDING / FORMATE-TETRAHYDROFOLATE LIGASE
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.5995	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.4663	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT4G26110	Predicted Affinity Capture-MS	FSW = 0.0107	Class C: plasma membrane	NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.3813	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.4502	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.3830	Class C: nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.3824	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.4339	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.1909	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G36010	Predicted two hybrid	FSW = 0.0211	Class C: nucleus	E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT4G19610	Predicted two hybrid	FSW = 0.0429	Class C: nucleus	RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.3145	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT2G41840	Predicted Affinity Capture-MS	FSW = 0.2589	Class C: nucleus	40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.3741	Class C: nucleus	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.5215	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G01040	Predicted two hybrid	FSW = 0.0139	Class C: nucleus	DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.3844	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G17590	Predicted two hybrid	FSW = 0.0089	Class C: nucleus	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT3G18140	Predicted two hybrid	FSW = 0.0182	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.5203	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G14590	Predicted Affinity Capture-MS	FSW = 0.0247	Unknown	ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.3514	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G06530	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1079	Unknown	BINDING
AT2G33340	Predicted Co-purification	FSW = 0.0347	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.3678	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT3G52090	Predicted two hybrid	FSW = 0.0205	Unknown	NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G02960	Predicted Affinity Capture-MS	FSW = 0.2175	Unknown	40S RIBOSOMAL PROTEIN S23 (RPS23B)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4132	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.2652	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.3440	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT1G16190	Predicted interaction prediction	FSW = 0.0060	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G19310	Predicted two hybrid	FSW = 0.0434	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G60970	Predicted two hybrid	FSW = 0.0171	Unknown	CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT4G16144	Predicted two hybrid	FSW = 0.0182	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MOV34 FAMILY PROTEIN (TAIRAT1G487901) HAS 622 BLAST HITS TO 459 PROTEINS IN 132 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 326 FUNGI - 156 PLANTS - 82 VIRUSES - 0 OTHER EUKARYOTES - 58 (SOURCE NCBI BLINK)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.4611	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G15440	Predicted Affinity Capture-MS	FSW = 0.1092	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.3562	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT1G69070	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1502	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT2G39840	Predicted Affinity Capture-MS	FSW = 0.0429	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G01160	Predicted Affinity Capture-MS	FSW = 0.1061	Unknown	UNKNOWN PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.4048	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.5161	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3401	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.2340	Unknown	ATRLI2 TRANSPORTER
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.0399	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G27640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0288	Unknown	IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT4G28200	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1179	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT5G08420	Predicted Affinity Capture-MS	FSW = 0.2295	Unknown	RNA BINDING
AT5G11900	Predicted Affinity Capture-MS	FSW = 0.0389	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT3G54470	Predicted two hybrid	FSW = 0.0212	Unknown	URIDINE 5-MONOPHOSPHATE SYNTHASE / UMP SYNTHASE (PYRE-F) (UMPS)
AT4G15930	Predicted two hybrid Co-expression	FSW = 0.0156	Unknown	MICROTUBULE MOTOR
AT5G37350	Predicted interaction prediction	FSW = 0.0222	Unknown	RIO1 FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT4G34670 - ( 40S ribosomal protein S3A (RPS3aB) )

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