Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G52090 - ( NRPB11 DNA binding / DNA-directed RNA polymerase )
33 Proteins interacs with AT3G52090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G15430 | Experimentalcoimmunoprecipitation | FSW = 0.3043
| Class D:nucleus (p = 0.78) | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G15400 | Experimentalcoimmunoprecipitation | FSW = 0.5258
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G04920 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0228
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT3G04840 | Predictedtwo hybrid | FSW = 0.0270
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT4G12610 | PredictedAffinity Capture-MS | FSW = 0.3103
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT4G35800 | PredictedCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complexfar western blottinginteraction predictionEnriched domain pairCo-expression | FSW = 0.2493
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G34670 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0187
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G16980 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4365
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT2G38560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1679
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1717
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1685
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G09920 | PredictedAffinity Capture-MS | FSW = 0.5538
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT1G75510 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3639
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT5G28060 | Predictedtwo hybrid | FSW = 0.0344
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT1G61700 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3712
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT4G21710 | PredictedAffinity Capture-MSAffinity Capture-MSfar western blottingAffinity Capture-MSco-fractionationCo-fractionationEnriched domain pairCo-expression | FSW = 0.3783
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G59180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.6779
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0088
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G67540 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G41910 | PredictedAffinity Capture-MS | FSW = 0.3403
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT5G61330 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0207
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G54250 | PredictedAffinity Capture-MS | FSW = 0.4780
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT1G32130 | PredictedAffinity Capture-MS | FSW = 0.1541
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT2G44150 | PredictedAffinity Capture-MS | FSW = 0.1446
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4317
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G63670 | PredictedAffinity Capture-MS | FSW = 0.2016
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G51940 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3716
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G58003 | PredictedAffinity Capture-MS | FSW = 0.4359
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT1G11475 | PredictedAffinity Capture-MSEnriched domain pair | FSW = 0.3908
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G04630 | PredictedAffinity Capture-MS | FSW = 0.4174
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G05670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2516
| Unknown | PHD FINGER FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454