Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41910 - ( RNA polymerase II mediator complex protein-related )
33 Proteins interacs with AT5G41910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G21350 | Experimental | FSW = 0.3103
| Unknown | RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED |
AT4G35800 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1661
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G33090 | Predictedinteraction prediction | FSW = 0.0083
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT3G16980 | PredictedAffinity Capture-MS | FSW = 0.2467
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G09920 | PredictedAffinity Capture-MS | FSW = 0.2830
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT2G15430 | PredictedAffinity Capture-MS | FSW = 0.1611
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G59180 | PredictedAffinity Capture-MS | FSW = 0.3798
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT3G52090 | PredictedAffinity Capture-MS | FSW = 0.3403
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G19910 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0819
| Unknown | SOH1 FAMILY PROTEIN |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.2111
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G61700 | PredictedAffinity Capture-MS | FSW = 0.2981
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT2G15400 | PredictedAffinity Capture-MS | FSW = 0.3340
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0123
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G21274 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT5G01390 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G14180 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT1G07950 | PredictedAffinity Capture-MS | FSW = 0.0885
| Unknown | SURFEIT LOCUS PROTEIN 5 FAMILY PROTEIN / SURF5 FAMILY PROTEIN |
AT1G11475 | PredictedAffinity Capture-MS | FSW = 0.2501
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G55325 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAP240 (INTERPROIPR009401) HAS 190 BLAST HITS TO 182 PROTEINS IN 65 SPECIES ARCHAE - 0 BACTERIA - 45 METAZOA - 113 FUNGI - 3 PLANTS - 23 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT2G22370 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1216
| Unknown | UNKNOWN PROTEIN |
AT3G04740 | PredictedAffinity Capture-MS | FSW = 0.1622
| Unknown | SWP (STRUWWELPETER) |
AT3G22320 | PredictedAffinity Capture-MS | FSW = 0.2121
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G59600 | PredictedAffinity Capture-MS | FSW = 0.1296
| Unknown | NRPB8B DNA-DIRECTED RNA POLYMERASE |
AT4G16265 | PredictedAffinity Capture-MS | FSW = 0.0314
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G28300 | PredictedAffinity Capture-MS | FSW = 0.1622
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT5G03220 | PredictedAffinity Capture-MS | FSW = 0.1884
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
AT5G03500 | PredictedAffinity Capture-MS | FSW = 0.1111
| Unknown | TRANSCRIPTION COACTIVATOR |
AT5G41010 | PredictedAffinity Capture-MS | FSW = 0.2722
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G48630 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G51940 | PredictedAffinity Capture-MS | FSW = 0.2523
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G57980 | PredictedAffinity Capture-MS | FSW = 0.0923
| Unknown | RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT C) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G63610 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0525
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G26665 | PredictedPhylogenetic profile method | FSW = 0.1853
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454